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Basecalling of automated sequencer traces using phred. I. Accuracy Assessment
 GENOME RES
, 1998
"... The availability of massive amounts of DNA sequence information has begun to revolutionize the practice of biology. As a result, current largescale sequencing output, while impressive, is not adequate to keep pace with growing demand and, in particular, is far short of what will be required to obta ..."
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Cited by 1653 (4 self)
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accuracy. phred appears to be the first basecalling program to achieve a lower error rate than the ABI software, averaging 40%–50 % fewer errors in the data sets examined independent of position in read, machine running conditions, or sequencing chemistry.
Genetic Programming
, 1997
"... Introduction Genetic programming is a domainindependent problemsolving approach in which computer programs are evolved to solve, or approximately solve, problems. Genetic programming is based on the Darwinian principle of reproduction and survival of the fittest and analogs of naturally occurring ..."
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Cited by 1056 (12 self)
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Introduction Genetic programming is a domainindependent problemsolving approach in which computer programs are evolved to solve, or approximately solve, problems. Genetic programming is based on the Darwinian principle of reproduction and survival of the fittest and analogs of naturally occurring
Dynamic programming algorithm optimization for spoken word recognition
 IEEE TRANSACTIONS ON ACOUSTICS, SPEECH, AND SIGNAL PROCESSING
, 1978
"... This paper reports on an optimum dynamic programming (DP) based timenormalization algorithm for spoken word recognition. First, a general principle of timenormalization is given using timewarping function. Then, two timenormalized distance definitions, ded symmetric and asymmetric forms, are der ..."
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Cited by 788 (3 self)
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This paper reports on an optimum dynamic programming (DP) based timenormalization algorithm for spoken word recognition. First, a general principle of timenormalization is given using timewarping function. Then, two timenormalized distance definitions, ded symmetric and asymmetric forms
The Semantics Of Constraint Logic Programs
 JOURNAL OF LOGIC PROGRAMMING
, 1996
"... This paper presents for the first time the semantic foundations of CLP in a selfcontained and complete package. The main contributions are threefold. First, we extend the original conference paper by presenting definitions and basic semantic constructs from first principles, giving new and comp ..."
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Cited by 872 (14 self)
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This paper presents for the first time the semantic foundations of CLP in a selfcontained and complete package. The main contributions are threefold. First, we extend the original conference paper by presenting definitions and basic semantic constructs from first principles, giving new
An axiomatic basis for computer programming
 COMMUNICATIONS OF THE ACM
, 1969
"... In this paper an attempt is made to explore the logical foundations of computer programming by use of techniques which were first applied in the study of geometry and have later been extended to other branches of mathematics. This involves the elucidation of sets of axioms and rules of inference w ..."
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Cited by 1754 (4 self)
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In this paper an attempt is made to explore the logical foundations of computer programming by use of techniques which were first applied in the study of geometry and have later been extended to other branches of mathematics. This involves the elucidation of sets of axioms and rules of inference
Learning Stochastic Logic Programs
, 2000
"... Stochastic Logic Programs (SLPs) have been shown to be a generalisation of Hidden Markov Models (HMMs), stochastic contextfree grammars, and directed Bayes' nets. A stochastic logic program consists of a set of labelled clauses p:C where p is in the interval [0,1] and C is a firstorder r ..."
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Cited by 1194 (81 self)
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Stochastic Logic Programs (SLPs) have been shown to be a generalisation of Hidden Markov Models (HMMs), stochastic contextfree grammars, and directed Bayes' nets. A stochastic logic program consists of a set of labelled clauses p:C where p is in the interval [0,1] and C is a first
Concurrent Constraint Programming
, 1993
"... This paper presents a new and very rich class of (concurrent) programming languages, based on the notion of comput.ing with parhal information, and the concommitant notions of consistency and entailment. ’ In this framework, computation emerges from the interaction of concurrently executing agent ..."
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Cited by 502 (16 self)
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” [JL87,Mah87], fundamentally generalizes concurrent logic programming, and is the subject of the first author’s dissertation [Sar89], on which this paper is substantially based.
Description Logic Programs: Combining Logic Programs with Description Logic
, 2002
"... We show how to interoperate, semantically and inferentially, between the leading Semantic Web approaches to rules (RuleML Logic Programs) and ontologies (OWL/DAML+OIL Description Logic) via analyzing their expressive intersection. To do so, we define a new intermediate knowledge representation (KR) ..."
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Cited by 529 (46 self)
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) contained within this intersection: Description Logic Programs (DLP), and the closely related Description Horn Logic (DHL) which is an expressive fragment of firstorder logic (FOL). DLP provides a significant degree of expressiveness, substantially greater than the RDFSchema fragment of Description Logic.
Learning the Kernel Matrix with SemiDefinite Programming
, 2002
"... Kernelbased learning algorithms work by embedding the data into a Euclidean space, and then searching for linear relations among the embedded data points. The embedding is performed implicitly, by specifying the inner products between each pair of points in the embedding space. This information ..."
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Cited by 775 (21 self)
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Kernelbased learning algorithms work by embedding the data into a Euclidean space, and then searching for linear relations among the embedded data points. The embedding is performed implicitly, by specifying the inner products between each pair of points in the embedding space. This information
GOLOG: A Logic Programming Language for Dynamic Domains
, 1994
"... This paper proposes a new logic programming language called GOLOG whose interpreter automatically maintains an explicit representation of the dynamic world being modeled, on the basis of user supplied axioms about the preconditions and effects of actions and the initial state of the world. This allo ..."
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Cited by 628 (74 self)
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This paper proposes a new logic programming language called GOLOG whose interpreter automatically maintains an explicit representation of the dynamic world being modeled, on the basis of user supplied axioms about the preconditions and effects of actions and the initial state of the world
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