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UniProt: the Universal Protein Knowledgebase

by Rolf Apweiler, Amos Bairoch, Cathy H. Wu, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria J. Martin, Darren A. Natale, Claire O'Donovan, Nicole Redaschi, Lai-Su L. Yeh - NUCLEIC ACIDS RES , 2004
"... To provide the scientific community with a single, centralized, authoritative resource for protein sequences and functional information, the Swiss-Prot, TrEMBL and PIR protein database activities have united to form the Universal Protein Knowledgebase (UniProt) consortium. Our mission is to provide ..."
Abstract - Cited by 335 (27 self) - Add to MetaCart
a comprehensive, fully classified, richly and accurately annotated protein sequence knowledgebase, with extensive cross-references and query interfaces. The central database will have two sections, corresponding to the familiar Swiss-Prot (fully manually curated entries) and TrEMBL (enriched

Boomerang: Resourceful lenses for string data

by Aaron Bohannon, J. Nathan Foster, Benjamin C. Pierce, Alexandre Pilkiewicz, École Polytechnique, Alan Schmitt , 2007
"... A lens is a bidirectional program. When read from left to right, it denotes an ordinary function that maps inputs to outputs. When read from right to left, it denotes an “update translator ” that takes an input together with an updated output and produces a new input that reflects the update. Many v ..."
Abstract - Cited by 82 (14 self) - Add to MetaCart
and implementation of Boomerang, a full-blown bidirectional programming language with dictionary lenses at its core. We have used Boomerang to build transformers for complex real-world data formats including the SwissProt genomic database. We formalize the essential property of resourcefulness—the correct use

2004, Xpro: database of eukaryotic protein-encoding genes,Nucleic Acids

by Vivek Gopalan, Tin Wee Tan, Bernett T. K. Lee, Shoba Ranganathan - Res
"... Xpro is a relational database that contains all the eukaryotic protein-encoding DNA sequences contained in GenBank with associated data required for the analysis of eukaryotic gene architecture. In addition to the information found in the GenBank records, which includes properties such as sequence, ..."
Abstract - Cited by 12 (0 self) - Add to MetaCart
. An Entrez-like query system, which is familiar to most biologists, is provided for accessing the information present in the database system. A non-redundant set of Xpro database contents is also obtained by cross-referencing to the Swiss-Prot/TrEMBL and Pfam databases. The database currently contains

Abstract Boomerang: Resourceful Lenses for String Data

by Aaron Bohannon, J. Nathan Foster
"... A lens is a bidirectional program. When read from left to right, it denotes an ordinary function that maps inputs to outputs. When read from right to left, it denotes an “update translator ” that takes an input together with an updated output and produces a new input that reflects the update. Many v ..."
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and implementation of Boomerang, a full-blown bidirectional programming language with dictionary lenses at its core. We have used Boomerang to build transformers for complex real-world data formats including the SwissProt genomic database. We formalize the essential property of resourcefulness—the correct use

Abstract

by Aaron Bohannon, Alexandre Pilkiewicz, École Polytechnique, J. Nathan Foster, Benjamin C. Pierce, Alan Schmitt , 2007
"... A lens is a bidirectional program. When read from left to right, it denotes an ordinary function that maps inputs to outputs. When read from right to left, it denotes an “update translator ” that takes an input together with an updated output and produces a new input that reflects the update. Many v ..."
Abstract - Add to MetaCart
and implementation of Boomerang, a full-blown bidirectional programming language with dictionary lenses at its core. We have used Boomerang to build transformers for complex real-world data formats including the SwissProt genomic database. We formalize the essential property of resourcefulness—the correct use

This paper is posted at ScholarlyCommons.

by Aaron Bohannon, J. Nathan, Foster Benjamin, C. Pierce, École Polytechnique, Aaron Bohannon, J. Nathan Foster, Benjamin C. Pierce, Alexandre Pilkiewicz, École Polytechnique, Alan Schmitt , 2007
"... A lens is a bidirectional program. When read from left to right, it denotes an ordinary function that maps inputs to outputs. When read from right to left, it denotes an “update translator ” that takes an input together with an updated output and produces a new input that reflects the update. Many v ..."
Abstract - Add to MetaCart
and implementation of Boomerang, a full-blown bidirectional programming language with dictionary lenses at its core. We have used Boomerang to build transformers for complex real-world data formats including the SwissProt genomic database. We formalize the essential property of resourcefulness—the correct use
Results 1 - 6 of 6