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Exact Sampling with Coupled Markov Chains and Applications to Statistical Mechanics
, 1996
"... For many applications it is useful to sample from a finite set of objects in accordance with some particular distribution. One approach is to run an ergodic (i.e., irreducible aperiodic) Markov chain whose stationary distribution is the desired distribution on this set; after the Markov chain has ..."
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Cited by 548 (13 self)
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, and that outputs samples in exact accordance with the desired distribution. The method uses couplings, which have also played a role in other sampling schemes; however, rather than running the coupled chains from the present into the future, one runs from a distant point in the past up until the present, where
KodairaSpencer theory of gravity and exact results for quantum string amplitudes
 Commun. Math. Phys
, 1994
"... We develop techniques to compute higher loop string amplitudes for twisted N = 2 theories with ĉ = 3 (i.e. the critical case). An important ingredient is the discovery of an anomaly at every genus in decoupling of BRST trivial states, captured to all orders by a master anomaly equation. In a particu ..."
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Cited by 545 (60 self)
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We develop techniques to compute higher loop string amplitudes for twisted N = 2 theories with ĉ = 3 (i.e. the critical case). An important ingredient is the discovery of an anomaly at every genus in decoupling of BRST trivial states, captured to all orders by a master anomaly equation. In a particular realization of the N = 2 theories, the resulting string field theory is equivalent to a topological theory in six dimensions, the Kodaira– Spencer theory, which may be viewed as the closed string analog of the Chern–Simon theory. Using the mirror map this leads to computation of the ‘number ’ of holomorphic curves of higher genus curves in Calabi–Yau manifolds. It is shown that topological amplitudes can also be reinterpreted as computing corrections to superpotential terms appearing in the effective 4d theory resulting from compactification of standard 10d superstrings on the corresponding N = 2 theory. Relations with c = 1 strings are also pointed out.
PseudoRandom Generation from OneWay Functions
 PROC. 20TH STOC
, 1988
"... Pseudorandom generators are fundamental to many theoretical and applied aspects of computing. We show howto construct a pseudorandom generator from any oneway function. Since it is easy to construct a oneway function from a pseudorandom generator, this result shows that there is a pseudorandom gene ..."
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Cited by 887 (22 self)
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Pseudorandom generators are fundamental to many theoretical and applied aspects of computing. We show howto construct a pseudorandom generator from any oneway function. Since it is easy to construct a oneway function from a pseudorandom generator, this result shows that there is a pseudorandom
Sequence Logos: A New Way to Display Consensus Sequences
 Nucleic Acids Res
, 1990
"... INTRODUCTION A logo is "a single piece of type bearing two or more usually separate elements" [1]. In this paper, we use logos to display aligned sets of sequences. Sequence logos concentrate the following information into a single graphic [2]: 1. The general consensus of the sequences. ..."
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Cited by 638 (27 self)
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INTRODUCTION A logo is "a single piece of type bearing two or more usually separate elements" [1]. In this paper, we use logos to display aligned sets of sequences. Sequence logos concentrate the following information into a single graphic [2]: 1. The general consensus of the sequences. National Cancer Institute, Frederick Cancer Research and Development Center, Laboratory of Mathematical Biology, P. O. Box B, Frederick, MD 21701. Internet addresses: toms@ncifcrf.gov and stephens@ncifcrf.gov. y corresponding author 1 2. The order of predominance of the residues at every position. 3. The relative frequencies of every residue at every position. 4. The amount of information present at every position in the sequence, measured in bits. 5. An initiation point, cut point, or other significant location (if appropriate) . Any aligned set of DNA, RNA or protein sequences can be represented using this technique. CREATION OF BINDING S
Dynamic Bayesian Networks: Representation, Inference and Learning
, 2002
"... Modelling sequential data is important in many areas of science and engineering. Hidden Markov models (HMMs) and Kalman filter models (KFMs) are popular for this because they are simple and flexible. For example, HMMs have been used for speech recognition and biosequence analysis, and KFMs have bee ..."
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Cited by 758 (3 self)
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sequential data.
In particular, the main novel technical contributions of this thesis are as follows: a way of representing
Hierarchical HMMs as DBNs, which enables inference to be done in O(T) time instead of O(T 3), where T is the length of the sequence; an exact smoothing algorithm that takes O(log T
The Structure of Foreign Trade
, 1999
"... this paper what we know about foreign trade and in what ways our understanding has improved as a result of the last 20 years of research ..."
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Cited by 985 (16 self)
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this paper what we know about foreign trade and in what ways our understanding has improved as a result of the last 20 years of research
Efficient exact stochastic simulation of chemical systems with many species and many channels
 J. Phys. Chem. A
, 2000
"... There are two fundamental ways to view coupled systems of chemical equations: as continuous, represented by differential equations whose variables are concentrations, or as discrete, represented by stochastic processes whose variables are numbers of molecules. Although the former is by far more comm ..."
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Cited by 419 (5 self)
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There are two fundamental ways to view coupled systems of chemical equations: as continuous, represented by differential equations whose variables are concentrations, or as discrete, represented by stochastic processes whose variables are numbers of molecules. Although the former is by far more
Robust Principal Component Analysis?
, 2009
"... This paper is about a curious phenomenon. Suppose we have a data matrix, which is the superposition of a lowrank component and a sparse component. Can we recover each component individually? We prove that under some suitable assumptions, it is possible to recover both the lowrank and the sparse co ..."
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Cited by 553 (26 self)
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components exactly by solving a very convenient convex program called Principal Component Pursuit; among all feasible decompositions, simply minimize a weighted combination of the nuclear norm and of the ℓ1 norm. This suggests the possibility of a principled approach to robust principal component analysis
Random Early Detection Gateways for Congestion Avoidance
 IEEE/ACM TRANSACTIONS ON NETWORKING
, 1993
"... This paper presents Random Early Detection (RED) gateways for congestion avoidance in packetswitched networks. The gateway detects incipient congestion by computing the average queue size. The gateway could notify connections of congestion either by dropping packets arriving at the gateway or by ..."
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Cited by 2699 (31 self)
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This paper presents Random Early Detection (RED) gateways for congestion avoidance in packetswitched networks. The gateway detects incipient congestion by computing the average queue size. The gateway could notify connections of congestion either by dropping packets arriving at the gateway
Constructing Free Energy Approximations and Generalized Belief Propagation Algorithms
 IEEE Transactions on Information Theory
, 2005
"... Important inference problems in statistical physics, computer vision, errorcorrecting coding theory, and artificial intelligence can all be reformulated as the computation of marginal probabilities on factor graphs. The belief propagation (BP) algorithm is an efficient way to solve these problems t ..."
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Cited by 586 (13 self)
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Important inference problems in statistical physics, computer vision, errorcorrecting coding theory, and artificial intelligence can all be reformulated as the computation of marginal probabilities on factor graphs. The belief propagation (BP) algorithm is an efficient way to solve these problems
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