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Fast Parallel Algorithms for ShortRange Molecular Dynamics
 JOURNAL OF COMPUTATIONAL PHYSICS
, 1995
"... Three parallel algorithms for classical molecular dynamics are presented. The first assigns each processor a fixed subset of atoms; the second assigns each a fixed subset of interatomic forces to compute; the third assigns each a fixed spatial region. The algorithms are suitable for molecular dyn ..."
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Cited by 653 (7 self)
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Three parallel algorithms for classical molecular dynamics are presented. The first assigns each processor a fixed subset of atoms; the second assigns each a fixed subset of interatomic forces to compute; the third assigns each a fixed spatial region. The algorithms are suitable for molecular
A Modified Dynamic Parallel Algorithm for Sequence Alignment in BioSequences
"... This paper presents a Modified Dynamic Parallel Algorithm for Sequence Alignment in BioSequences. DNA sequence alignment between two or more bio sequences using algorithms is a complex problem due to its applicability in the field of biology. This algorithm achieves its efficiency in using computati ..."
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This paper presents a Modified Dynamic Parallel Algorithm for Sequence Alignment in BioSequences. DNA sequence alignment between two or more bio sequences using algorithms is a complex problem due to its applicability in the field of biology. This algorithm achieves its efficiency in using
The nas parallel benchmarks
 The International Journal of Supercomputer Applications
, 1991
"... A new set of benchmarks has been developed for the performance evaluation of highly parallel supercomputers. These benchmarks consist of ve \parallel kernel " benchmarks and three \simulated application" benchmarks. Together they mimic the computation and data movement characterist ..."
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Cited by 694 (9 self)
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characteristics of large scale computational uid dynamics applications. The principal distinguishing feature of these benchmarks is their \pencil and paper " speci cation  all details of these benchmarks are speci ed only algorithmically. In this way many of the di culties associated with conventional
A Framework for Dynamic Graph Drawing
 CONGRESSUS NUMERANTIUM
, 1992
"... Drawing graphs is an important problem that combines flavors of computational geometry and graph theory. Applications can be found in a variety of areas including circuit layout, network management, software engineering, and graphics. The main contributions of this paper can be summarized as follows ..."
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Cited by 628 (44 self)
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as follows: ffl We devise a model for dynamic graph algorithms, based on performing queries and updates on an implicit representation of the drawing, and we show its applications. ffl We present several efficient dynamic drawing algorithms for trees, seriesparallel digraphs, planar stdigraphs, and planar
Scalable molecular dynamics with NAMD.
 J Comput Chem
, 2005
"... Abstract: NAMD is a parallel molecular dynamics code designed for highperformance simulation of large biomolecular systems. NAMD scales to hundreds of processors on highend parallel platforms, as well as tens of processors on lowcost commodity clusters, and also runs on individual desktop and la ..."
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Cited by 849 (63 self)
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Abstract: NAMD is a parallel molecular dynamics code designed for highperformance simulation of large biomolecular systems. NAMD scales to hundreds of processors on highend parallel platforms, as well as tens of processors on lowcost commodity clusters, and also runs on individual desktop
Parallel Numerical Linear Algebra
, 1993
"... We survey general techniques and open problems in numerical linear algebra on parallel architectures. We first discuss basic principles of parallel processing, describing the costs of basic operations on parallel machines, including general principles for constructing efficient algorithms. We illust ..."
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Cited by 773 (23 self)
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We survey general techniques and open problems in numerical linear algebra on parallel architectures. We first discuss basic principles of parallel processing, describing the costs of basic operations on parallel machines, including general principles for constructing efficient algorithms. We
Dynamic programming algorithm optimization for spoken word recognition
 IEEE TRANSACTIONS ON ACOUSTICS, SPEECH, AND SIGNAL PROCESSING
, 1978
"... This paper reports on an optimum dynamic programming (DP) based timenormalization algorithm for spoken word recognition. First, a general principle of timenormalization is given using timewarping function. Then, two timenormalized distance definitions, ded symmetric and asymmetric forms, are der ..."
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Cited by 788 (3 self)
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This paper reports on an optimum dynamic programming (DP) based timenormalization algorithm for spoken word recognition. First, a general principle of timenormalization is given using timewarping function. Then, two timenormalized distance definitions, ded symmetric and asymmetric forms
PVM: A Framework for Parallel Distributed Computing
 Concurrency: Practice and Experience
, 1990
"... The PVM system is a programming environment for the development and execution of large concurrent or parallel applications that consist of many interacting, but relatively independent, components. It is intended to operate on a collection of heterogeneous computing elements interconnected by one or ..."
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Cited by 788 (27 self)
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of various types of algorithms (and their interactions), while the underlying infrastructure permits the execution of applications on a virtual computing environment that supports multiple parallel computation models. PVM contains facilities for concurrent, sequential, or conditional execution of application
The algorithmic analysis of hybrid systems
 THEORETICAL COMPUTER SCIENCE
, 1995
"... We present a general framework for the formal specification and algorithmic analysis of hybrid systems. A hybrid system consists of a discrete program with an analog environment. We model hybrid systems as nite automata equipped with variables that evolve continuously with time according to dynamica ..."
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Cited by 778 (71 self)
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We present a general framework for the formal specification and algorithmic analysis of hybrid systems. A hybrid system consists of a discrete program with an analog environment. We model hybrid systems as nite automata equipped with variables that evolve continuously with time according
An Algorithm for Tracking Multiple Targets
 IEEE Transactions on Automatic Control
, 1979
"... Abstract—An algorithm for tracking multiple targets In a cluttered algorithms. Clustering is the process of dividing the entire environment Is developed. The algorithm Is capable of Initiating tracks, set of targets and measurements into independent groups accounting for false or m[~clngreports, and ..."
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Cited by 596 (0 self)
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Abstract—An algorithm for tracking multiple targets In a cluttered algorithms. Clustering is the process of dividing the entire environment Is developed. The algorithm Is capable of Initiating tracks, set of targets and measurements into independent groups accounting for false or m
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