Results 1 - 10 of 88,768

Fast Parallel Algorithms for Short-Range Molecular Dynamics

by Steve Plimpton - JOURNAL OF COMPUTATIONAL PHYSICS , 1995
"... Three parallel algorithms for classical molecular dynamics are presented. The first assigns each processor a fixed subset of atoms; the second assigns each a fixed subset of inter-atomic forces to compute; the third assigns each a fixed spatial region. The algorithms are suitable for molecular dyn ..."
Abstract - Cited by 653 (7 self) - Add to MetaCart
Three parallel algorithms for classical molecular dynamics are presented. The first assigns each processor a fixed subset of atoms; the second assigns each a fixed subset of inter-atomic forces to compute; the third assigns each a fixed spatial region. The algorithms are suitable for molecular

A Modified Dynamic Parallel Algorithm for Sequence Alignment in BioSequences

by S. Nirmala Devi, S. P. Rajagopalan Phd
"... This paper presents a Modified Dynamic Parallel Algorithm for Sequence Alignment in BioSequences. DNA sequence alignment between two or more bio sequences using algorithms is a complex problem due to its applicability in the field of biology. This algorithm achieves its efficiency in using computati ..."
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This paper presents a Modified Dynamic Parallel Algorithm for Sequence Alignment in BioSequences. DNA sequence alignment between two or more bio sequences using algorithms is a complex problem due to its applicability in the field of biology. This algorithm achieves its efficiency in using

The nas parallel benchmarks

by D. H. Bailey, E. Barszcz, J. T. Barton, D. S. Browning, R. L. Carter, R. A. Fatoohi, P. O. Frederickson, T. A. Lasinski, H. D. Simon, V. Venkatakrishnan, S. K. Weeratunga - The International Journal of Supercomputer Applications , 1991
"... A new set of benchmarks has been developed for the performance evaluation of highly parallel supercomputers. These benchmarks consist of ve \parallel kernel " benchmarks and three \simulated application" benchmarks. Together they mimic the computation and data movement characterist ..."
Abstract - Cited by 694 (9 self) - Add to MetaCart
characteristics of large scale computational uid dynamics applications. The principal distinguishing feature of these benchmarks is their \pencil and paper " speci cation | all details of these benchmarks are speci ed only algorithmically. In this way many of the di culties associated with conventional

A Framework for Dynamic Graph Drawing

by Robert F. Cohen, G. Di Battista, R. Tamassia, Ioannis G. Tollis - CONGRESSUS NUMERANTIUM , 1992
"... Drawing graphs is an important problem that combines flavors of computational geometry and graph theory. Applications can be found in a variety of areas including circuit layout, network management, software engineering, and graphics. The main contributions of this paper can be summarized as follows ..."
Abstract - Cited by 628 (44 self) - Add to MetaCart
as follows: ffl We devise a model for dynamic graph algorithms, based on performing queries and updates on an implicit representation of the drawing, and we show its applications. ffl We present several efficient dynamic drawing algorithms for trees, series-parallel digraphs, planar st-digraphs, and planar

Scalable molecular dynamics with NAMD.

by James C Phillips , Rosemary Braun , Wei Wang , James Gumbart , Emad Tajkhorshid , Elizabeth Villa , Christophe Chipot , Robert D Skeel , Laxmikant Kalé , Klaus Schulten - J Comput Chem , 2005
"... Abstract: NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD scales to hundreds of processors on high-end parallel platforms, as well as tens of processors on low-cost commodity clusters, and also runs on individual desktop and la ..."
Abstract - Cited by 849 (63 self) - Add to MetaCart
Abstract: NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD scales to hundreds of processors on high-end parallel platforms, as well as tens of processors on low-cost commodity clusters, and also runs on individual desktop

Parallel Numerical Linear Algebra

by James W. Demmel, Michael T. Heath , Henk A. van der Vorst , 1993
"... We survey general techniques and open problems in numerical linear algebra on parallel architectures. We first discuss basic principles of parallel processing, describing the costs of basic operations on parallel machines, including general principles for constructing efficient algorithms. We illust ..."
Abstract - Cited by 773 (23 self) - Add to MetaCart
We survey general techniques and open problems in numerical linear algebra on parallel architectures. We first discuss basic principles of parallel processing, describing the costs of basic operations on parallel machines, including general principles for constructing efficient algorithms. We

Dynamic programming algorithm optimization for spoken word recognition

by Hiroaki Sakoe, Seibi Chiba - IEEE TRANSACTIONS ON ACOUSTICS, SPEECH, AND SIGNAL PROCESSING , 1978
"... This paper reports on an optimum dynamic programming (DP) based time-normalization algorithm for spoken word recognition. First, a general principle of time-normalization is given using timewarping function. Then, two time-normalized distance definitions, ded symmetric and asymmetric forms, are der ..."
Abstract - Cited by 788 (3 self) - Add to MetaCart
This paper reports on an optimum dynamic programming (DP) based time-normalization algorithm for spoken word recognition. First, a general principle of time-normalization is given using timewarping function. Then, two time-normalized distance definitions, ded symmetric and asymmetric forms

PVM: A Framework for Parallel Distributed Computing

by V. S. Sunderam - Concurrency: Practice and Experience , 1990
"... The PVM system is a programming environment for the development and execution of large concurrent or parallel applications that consist of many interacting, but relatively independent, components. It is intended to operate on a collection of heterogeneous computing elements interconnected by one or ..."
Abstract - Cited by 788 (27 self) - Add to MetaCart
of various types of algorithms (and their interactions), while the underlying infrastructure permits the execution of applications on a virtual computing environment that supports multiple parallel computation models. PVM contains facilities for concurrent, sequential, or conditional execution of application

The algorithmic analysis of hybrid systems

by R. Alur, C. Courcoubetis, N. Halbwachs , T. A. Henzinger, P.-H. Ho, X. Nicollin , A. Olivero , J. Sifakis , S. Yovine - THEORETICAL COMPUTER SCIENCE , 1995
"... We present a general framework for the formal specification and algorithmic analysis of hybrid systems. A hybrid system consists of a discrete program with an analog environment. We model hybrid systems as nite automata equipped with variables that evolve continuously with time according to dynamica ..."
Abstract - Cited by 778 (71 self) - Add to MetaCart
We present a general framework for the formal specification and algorithmic analysis of hybrid systems. A hybrid system consists of a discrete program with an analog environment. We model hybrid systems as nite automata equipped with variables that evolve continuously with time according

An Algorithm for Tracking Multiple Targets

by Donald B. Reid - IEEE Transactions on Automatic Control , 1979
"... Abstract—An algorithm for tracking multiple targets In a cluttered algorithms. Clustering is the process of dividing the entire environment Is developed. The algorithm Is capable of Initiating tracks, set of targets and measurements into independent groups accounting for false or m[~clngreports, and ..."
Abstract - Cited by 596 (0 self) - Add to MetaCart
Abstract—An algorithm for tracking multiple targets In a cluttered algorithms. Clustering is the process of dividing the entire environment Is developed. The algorithm Is capable of Initiating tracks, set of targets and measurements into independent groups accounting for false or m
Results 1 - 10 of 88,768