Results 1 - 10 of 49,940

Fast Parallel Algorithms for Short-Range Molecular Dynamics

by Steve Plimpton - JOURNAL OF COMPUTATIONAL PHYSICS , 1995
"... Three parallel algorithms for classical molecular dynamics are presented. The first assigns each processor a fixed subset of atoms; the second assigns each a fixed subset of inter-atomic forces to compute; the third assigns each a fixed spatial region. The algorithms are suitable for molecular dyn ..."
Abstract - Cited by 653 (7 self) - Add to MetaCart
Three parallel algorithms for classical molecular dynamics are presented. The first assigns each processor a fixed subset of atoms; the second assigns each a fixed subset of inter-atomic forces to compute; the third assigns each a fixed spatial region. The algorithms are suitable for molecular

Dynamic programming algorithm optimization for spoken word recognition

by Hiroaki Sakoe, Seibi Chiba - IEEE TRANSACTIONS ON ACOUSTICS, SPEECH, AND SIGNAL PROCESSING , 1978
"... This paper reports on an optimum dynamic programming (DP) based time-normalization algorithm for spoken word recognition. First, a general principle of time-normalization is given using timewarping function. Then, two time-normalized distance definitions, ded symmetric and asymmetric forms, are der ..."
Abstract - Cited by 788 (3 self) - Add to MetaCart
This paper reports on an optimum dynamic programming (DP) based time-normalization algorithm for spoken word recognition. First, a general principle of time-normalization is given using timewarping function. Then, two time-normalized distance definitions, ded symmetric and asymmetric forms

The algorithmic analysis of hybrid systems

by R. Alur, C. Courcoubetis, N. Halbwachs , T. A. Henzinger, P.-H. Ho, X. Nicollin , A. Olivero , J. Sifakis , S. Yovine - THEORETICAL COMPUTER SCIENCE , 1995
"... We present a general framework for the formal specification and algorithmic analysis of hybrid systems. A hybrid system consists of a discrete program with an analog environment. We model hybrid systems as nite automata equipped with variables that evolve continuously with time according to dynamica ..."
Abstract - Cited by 778 (71 self) - Add to MetaCart
We present a general framework for the formal specification and algorithmic analysis of hybrid systems. A hybrid system consists of a discrete program with an analog environment. We model hybrid systems as nite automata equipped with variables that evolve continuously with time according

Hierarchical mixtures of experts and the EM algorithm

by Michael I. Jordan, Robert A. Jacobs , 1993
"... We present a tree-structured architecture for supervised learning. The statistical model underlying the architecture is a hierarchical mixture model in which both the mixture coefficients and the mixture components are generalized linear models (GLIM’s). Learning is treated as a max-imum likelihood ..."
Abstract - Cited by 885 (21 self) - Add to MetaCart
problem; in particular, we present an Expectation-Maximization (EM) algorithm for adjusting the parame-ters of the architecture. We also develop an on-line learning algorithm in which the pa-rameters are updated incrementally. Comparative simulation results are presented in the robot dynamics domain.

A greedy algorithm for aligning DNA sequences

by Zheng Zhang, Scott Schwartz, Lukas Wagner, Webb Miller - J. COMPUT. BIOL , 2000
"... For aligning DNA sequences that differ only by sequencing errors, or by equivalent errors from other sources, a greedy algorithm can be much faster than traditional dynamic programming approaches and yet produce an alignment that is guaranteed to be theoretically optimal. We introduce a new greedy a ..."
Abstract - Cited by 585 (16 self) - Add to MetaCart
For aligning DNA sequences that differ only by sequencing errors, or by equivalent errors from other sources, a greedy algorithm can be much faster than traditional dynamic programming approaches and yet produce an alignment that is guaranteed to be theoretically optimal. We introduce a new greedy

A Framework for Dynamic Graph Drawing

by Robert F. Cohen, G. Di Battista, R. Tamassia, Ioannis G. Tollis - CONGRESSUS NUMERANTIUM , 1992
"... Drawing graphs is an important problem that combines flavors of computational geometry and graph theory. Applications can be found in a variety of areas including circuit layout, network management, software engineering, and graphics. The main contributions of this paper can be summarized as follows ..."
Abstract - Cited by 628 (44 self) - Add to MetaCart
as follows: ffl We devise a model for dynamic graph algorithms, based on performing queries and updates on an implicit representation of the drawing, and we show its applications. ffl We present several efficient dynamic drawing algorithms for trees, series-parallel digraphs, planar st-digraphs, and planar

Scalable molecular dynamics with NAMD.

by James C Phillips , Rosemary Braun , Wei Wang , James Gumbart , Emad Tajkhorshid , Elizabeth Villa , Christophe Chipot , Robert D Skeel , Laxmikant Kalé , Klaus Schulten - J Comput Chem , 2005
"... Abstract: NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD scales to hundreds of processors on high-end parallel platforms, as well as tens of processors on low-cost commodity clusters, and also runs on individual desktop and la ..."
Abstract - Cited by 849 (63 self) - Add to MetaCart
Abstract: NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD scales to hundreds of processors on high-end parallel platforms, as well as tens of processors on low-cost commodity clusters, and also runs on individual desktop

Dynamic Algorithms in Computational Geometry

by Yi-jen Chiang, Roberto Tamassia , 1992
"... Research on dynamic algorithms for geometric problems has received increasing attention in the last years, and is motivated by many important applications in circuit layout, computer graphics, and computer-aided design. In this paper we survey dynamic algorithms and data structures in the area of co ..."
Abstract - Cited by 92 (7 self) - Add to MetaCart
Research on dynamic algorithms for geometric problems has received increasing attention in the last years, and is motivated by many important applications in circuit layout, computer graphics, and computer-aided design. In this paper we survey dynamic algorithms and data structures in the area

Dynamic Bayesian Networks: Representation, Inference and Learning

by Kevin Patrick Murphy , 2002
"... Modelling sequential data is important in many areas of science and engineering. Hidden Markov models (HMMs) and Kalman filter models (KFMs) are popular for this because they are simple and flexible. For example, HMMs have been used for speech recognition and bio-sequence analysis, and KFMs have bee ..."
Abstract - Cited by 770 (3 self) - Add to MetaCart
been used for problems ranging from tracking planes and missiles to predicting the economy. However, HMMs and KFMs are limited in their “expressive power”. Dynamic Bayesian Networks (DBNs) generalize HMMs by allowing the state space to be represented in factored form, instead of as a single discrete

Social Information Filtering: Algorithms for Automating "Word of Mouth"

by Upendra Shardanand, Pattie Maes , 1995
"... This paper describes a technique for making personalized recommendations from any type of database to a user based on similarities between the interest profile of that user and those of other users. In particular, we discuss the implementation of a networked system called Ringo, which makes personal ..."
Abstract - Cited by 1159 (20 self) - Add to MetaCart
personalized recommendations for music albums and artists. Ringo's database of users and artists grows dynamically as more people use the system and enter more information. Four different algorithms for making recommendations by using social information filtering were tested and compared. We present
Results 1 - 10 of 49,940