Results 1  10
of
955,779
Maximum Likelihood Phylogenetic Estimation from DNA Sequences with Variable Rates over Sites: Approximate Methods
 J. Mol. Evol
, 1994
"... Two approximate methods are proposed for maximum likelihood phylogenetic estimation, which allow variable rates of substitution across nucleotide sites. Three data sets with quite different characteristics were analyzed to examine empirically the performance of these methods. The first, called ..."
Abstract

Cited by 540 (28 self)
 Add to MetaCart
Two approximate methods are proposed for maximum likelihood phylogenetic estimation, which allow variable rates of substitution across nucleotide sites. Three data sets with quite different characteristics were analyzed to examine empirically the performance of these methods. The first, called
Constructing Free Energy Approximations and Generalized Belief Propagation Algorithms
 IEEE Transactions on Information Theory
, 2005
"... Important inference problems in statistical physics, computer vision, errorcorrecting coding theory, and artificial intelligence can all be reformulated as the computation of marginal probabilities on factor graphs. The belief propagation (BP) algorithm is an efficient way to solve these problems t ..."
Abstract

Cited by 586 (13 self)
 Add to MetaCart
Important inference problems in statistical physics, computer vision, errorcorrecting coding theory, and artificial intelligence can all be reformulated as the computation of marginal probabilities on factor graphs. The belief propagation (BP) algorithm is an efficient way to solve these problems
A Critical Point For Random Graphs With A Given Degree Sequence
, 2000
"... Given a sequence of nonnegative real numbers 0 ; 1 ; : : : which sum to 1, we consider random graphs having approximately i n vertices of degree i. Essentially, we show that if P i(i \Gamma 2) i ? 0 then such graphs almost surely have a giant component, while if P i(i \Gamma 2) i ! 0 the ..."
Abstract

Cited by 511 (8 self)
 Add to MetaCart
Given a sequence of nonnegative real numbers 0 ; 1 ; : : : which sum to 1, we consider random graphs having approximately i n vertices of degree i. Essentially, we show that if P i(i \Gamma 2) i ? 0 then such graphs almost surely have a giant component, while if P i(i \Gamma 2) i ! 0
DNA primers for amplification of mitochondrial cytochrome ALLOGALATHEA: A MONOSPECIFIC GENUS? 267 © 2011 The Linnean
 Society of London, Zoological Journal of the Linnean Society
, 1994
"... We describe "universal " DNA primers for polymerase chain reaction (PCR) amplification of a 710bp fragment of the mitochondrial cytochrome c oxidasesubunit I gene (COI) from 11 invertebrate phyla:Echinodermata, Mollusca, Annelida, Pogonophora, Arthropoda, Nemertinea, Echiura, Sipuncula, ..."
Abstract

Cited by 546 (1 self)
 Add to MetaCart
We describe "universal " DNA primers for polymerase chain reaction (PCR) amplification of a 710bp fragment of the mitochondrial cytochrome c oxidasesubunit I gene (COI) from 11 invertebrate phyla:Echinodermata, Mollusca, Annelida, Pogonophora, Arthropoda, Nemertinea, Echiura, Sipuncula
A Threshold of ln n for Approximating Set Cover
 JOURNAL OF THE ACM
, 1998
"... Given a collection F of subsets of S = f1; : : : ; ng, set cover is the problem of selecting as few as possible subsets from F such that their union covers S, and max kcover is the problem of selecting k subsets from F such that their union has maximum cardinality. Both these problems are NPhar ..."
Abstract

Cited by 778 (5 self)
 Add to MetaCart
hard. We prove that (1 \Gamma o(1)) ln n is a threshold below which set cover cannot be approximated efficiently, unless NP has slightly superpolynomial time algorithms. This closes the gap (up to low order terms) between the ratio of approximation achievable by the greedy algorithm (which is (1 \Gamma
PAML: a program package for phylogenetic analysis by maximum likelihood
 COMPUT APPL BIOSCI 13:555–556
, 1997
"... PAML, currently in version 1.2, is a package of programs for phylogenetic analyses of DNA and protein sequences using the method of maximum likelihood (ML). The programs can be used for (i) maximum likelihood estimation of evolutionary parameters such as branch lengths in a phylogenetic tree, the tr ..."
Abstract

Cited by 1403 (16 self)
 Add to MetaCart
, the transition/transversion rate ratio, the shape parameter of the gamma distribution for variable evolutionary rates at sites, and rate parameters for different genes; (ii) likelihood ratio test of hypotheses concerning sequence evolution, such as rate constancy and independence among sites and rate constancy
A Structural Approach to Operational Semantics
, 1981
"... Syntax of a very simple programming language called L. What is abstract about it will be discussed a little here and later at greater length. For us syntax is a collection of syntactic sets of phrases; each set corresponds to a different type of phrase. Some of these sets are very simple and can be ..."
Abstract

Cited by 1541 (3 self)
 Add to MetaCart
Syntax of a very simple programming language called L. What is abstract about it will be discussed a little here and later at greater length. For us syntax is a collection of syntactic sets of phrases; each set corresponds to a different type of phrase. Some of these sets are very simple and can
A Direct Adaptive Method for Faster Backpropagation Learning: The RPROP Algorithm
 IEEE INTERNATIONAL CONFERENCE ON NEURAL NETWORKS
, 1993
"... A new learning algorithm for multilayer feedforward networks, RPROP, is proposed. To overcome the inherent disadvantages of pure gradientdescent, RPROP performs a local adaptation of the weightupdates according to the behaviour of the errorfunction. In substantial difference to other adaptive tech ..."
Abstract

Cited by 917 (34 self)
 Add to MetaCart
A new learning algorithm for multilayer feedforward networks, RPROP, is proposed. To overcome the inherent disadvantages of pure gradientdescent, RPROP performs a local adaptation of the weightupdates according to the behaviour of the errorfunction. In substantial difference to other adaptive
Capacity of multiantenna Gaussian channels
 EUROPEAN TRANSACTIONS ON TELECOMMUNICATIONS
, 1999
"... We investigate the use of multiple transmitting and/or receiving antennas for single user communications over the additive Gaussian channel with and without fading. We derive formulas for the capacities and error exponents of such channels, and describe computational procedures to evaluate such form ..."
Abstract

Cited by 2878 (6 self)
 Add to MetaCart
such formulas. We show that the potential gains of such multiantenna systems over singleantenna systems is rather large under independence assumptions for the fades and noises at different receiving antennas.
Optimization Flow Control, I: Basic Algorithm and Convergence
 IEEE/ACM TRANSACTIONS ON NETWORKING
, 1999
"... We propose an optimization approach to flow control where the objective is to maximize the aggregate source utility over their transmission rates. We view network links and sources as processors of a distributed computation system to solve the dual problem using gradient projection algorithm. In thi ..."
Abstract

Cited by 690 (64 self)
 Add to MetaCart
. In this system sources select transmission rates that maximize their own benefits, utility minus bandwidth cost, and network links adjust bandwidth prices to coordinate the sources' decisions. We allow feedback delays to be different, substantial and timevarying, and links and sources to update
Results 1  10
of
955,779