Results 1  10
of
1,197,839
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
, 2003
"... The increase in the number of large data sets and the complexity of current probabilistic sequence evolution models necessitates fast and reliable phylogeny reconstruction methods. We describe a new approach, based on the maximumlikelihood principle, which clearly satisfies these requirements. The ..."
Abstract

Cited by 2182 (27 self)
 Add to MetaCart
The increase in the number of large data sets and the complexity of current probabilistic sequence evolution models necessitates fast and reliable phylogeny reconstruction methods. We describe a new approach, based on the maximumlikelihood principle, which clearly satisfies these requirements
Conditional random fields: Probabilistic models for segmenting and labeling sequence data
, 2001
"... We present conditional random fields, a framework for building probabilistic models to segment and label sequence data. Conditional random fields offer several advantages over hidden Markov models and stochastic grammars for such tasks, including the ability to relax strong independence assumptions ..."
Abstract

Cited by 3485 (85 self)
 Add to MetaCart
We present conditional random fields, a framework for building probabilistic models to segment and label sequence data. Conditional random fields offer several advantages over hidden Markov models and stochastic grammars for such tasks, including the ability to relax strong independence assumptions
A Neural Probabilistic Language Model
 JOURNAL OF MACHINE LEARNING RESEARCH
, 2003
"... A goal of statistical language modeling is to learn the joint probability function of sequences of words in a language. This is intrinsically difficult because of the curse of dimensionality: a word sequence on which the model will be tested is likely to be different from all the word sequences seen ..."
Abstract

Cited by 447 (19 self)
 Add to MetaCart
A goal of statistical language modeling is to learn the joint probability function of sequences of words in a language. This is intrinsically difficult because of the curse of dimensionality: a word sequence on which the model will be tested is likely to be different from all the word sequences
What is a hidden Markov model?
, 2004
"... Often, problems in biological sequence analysis are just a matter of putting the right label on each residue. In gene identification, we want to label nucleotides as exons, introns, or intergenic sequence. In sequence alignment, we want to associate residues in a query sequence with homologous resi ..."
Abstract

Cited by 1344 (8 self)
 Add to MetaCart
, and a polyadenylation signal. All too often, piling more reality onto a fragile ad hoc program makes it collapse under its own weight. Hidden Markov models (HMMs) are a formal foundation for making probabilistic models of
Maximum entropy markov models for information extraction and segmentation
, 2000
"... Hidden Markov models (HMMs) are a powerful probabilistic tool for modeling sequential data, and have been applied with success to many textrelated tasks, such as partofspeech tagging, text segmentation and information extraction. In these cases, the observations are usually modeled as multinomial ..."
Abstract

Cited by 561 (18 self)
 Add to MetaCart
Hidden Markov models (HMMs) are a powerful probabilistic tool for modeling sequential data, and have been applied with success to many textrelated tasks, such as partofspeech tagging, text segmentation and information extraction. In these cases, the observations are usually modeled
Fitting a mixture model by expectation maximization to discover motifs in biopolymers.
 Proc Int Conf Intell Syst Mol Biol
, 1994
"... Abstract The algorithm described in this paper discovers one or more motifs in a collection of DNA or protein sequences by using the technique of expect~tiou ma.,dmization to fit a twocomponent finite mixture model to the set of sequences. Multiple motifs are found by fitting a mixture model to th ..."
Abstract

Cited by 947 (5 self)
 Add to MetaCart
to the data, probabilistically erasing tile occurrences of the motif thus found, and repeating the process to find successive motifs. The algorithm requires only a set of unaligned sequences and a number specifying the width of the motifs as input. It returns a model of each motif and a threshold which
Incorporating nonlocal information into information extraction systems by Gibbs sampling
 IN ACL
, 2005
"... Most current statistical natural language processing models use only local features so as to permit dynamic programming in inference, but this makes them unable to fully account for the long distance structure that is prevalent in language use. We show how to solve this dilemma with Gibbs sampling, ..."
Abstract

Cited by 730 (25 self)
 Add to MetaCart
, a simple Monte Carlo method used to perform approximate inference in factored probabilistic models. By using simulated annealing in place of Viterbi decoding in sequence models such as HMMs, CMMs, and CRFs, it is possible to incorporate nonlocal structure while preserving tractable inference. We
Constrained model predictive control: Stability and optimality
 AUTOMATICA
, 2000
"... Model predictive control is a form of control in which the current control action is obtained by solving, at each sampling instant, a finite horizon openloop optimal control problem, using the current state of the plant as the initial state; the optimization yields an optimal control sequence and t ..."
Abstract

Cited by 738 (16 self)
 Add to MetaCart
Model predictive control is a form of control in which the current control action is obtained by solving, at each sampling instant, a finite horizon openloop optimal control problem, using the current state of the plant as the initial state; the optimization yields an optimal control sequence
Paml 4: Phylogenetic analysis by maximum likelihood
 Mol. Biol. Evol
, 2007
"... PAML, currently in version 4, is a package of programs for phylogenetic analyses of DNA and protein sequences using maximum likelihood (ML). The programs may be used to compare and test phylogenetic trees, but their main strengths lie in the rich repertoire of evolutionary models implemented, which ..."
Abstract

Cited by 1201 (28 self)
 Add to MetaCart
PAML, currently in version 4, is a package of programs for phylogenetic analyses of DNA and protein sequences using maximum likelihood (ML). The programs may be used to compare and test phylogenetic trees, but their main strengths lie in the rich repertoire of evolutionary models implemented, which
Results 1  10
of
1,197,839