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Fast Folding and Comparison of RNA Secondary Structures (The Vienna RNA Package)

by Ivo L. Hofacker, Walter Fontana, Peter F. Stadler, L. Sebastian Bonhoeffer, Manfred Tacker, Peter Schuster
"... Computer codes for computation and comparison of RNA secondary structures, the Vienna RNA package, are presented, that are based on dynamic programming algorithms and aim at predictions of structures with minimum free energies as well as at computations of the equilibrium partition functions and bas ..."
Abstract - Cited by 809 (117 self) - Add to MetaCart
implementations of modified algorithms on parallel computers with distributed memory. Performance analysis carried out on an Intel Hypercube shows that parallel computing becomes gradually more and more efficient the longer the sequences are.

Fast Parallel Algorithms for Short-Range Molecular Dynamics

by Steve Plimpton - JOURNAL OF COMPUTATIONAL PHYSICS , 1995
"... Three parallel algorithms for classical molecular dynamics are presented. The first assigns each processor a fixed subset of atoms; the second assigns each a fixed subset of inter-atomic forces to compute; the third assigns each a fixed spatial region. The algorithms are suitable for molecular dyn ..."
Abstract - Cited by 653 (7 self) - Add to MetaCart
Three parallel algorithms for classical molecular dynamics are presented. The first assigns each processor a fixed subset of atoms; the second assigns each a fixed subset of inter-atomic forces to compute; the third assigns each a fixed spatial region. The algorithms are suitable for molecular

Equation of state calculations by fast computing machines.

by Nicholas Metropolis , Arianna W Rosenbluth , Marshall N Rosenbluth , Augusta H Teller , Edward - J. Chem. Phys., , 1953
"... ..."
Abstract - Cited by 3626 (0 self) - Add to MetaCart
Abstract not found

A Security Architecture for Computational Grids

by Ian Foster , Carl Kesselman, Gene Tsudik, Steven Tuecke , 1998
"... State-of-the-art and emerging scientific applications require fast access to large quantities of data and commensurately fast computational resources. Both resources and data are often distributed in a wide-area network with components administered locally and independently. Computations may involve ..."
Abstract - Cited by 568 (47 self) - Add to MetaCart
State-of-the-art and emerging scientific applications require fast access to large quantities of data and commensurately fast computational resources. Both resources and data are often distributed in a wide-area network with components administered locally and independently. Computations may

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

by Stéphane Guindon, Olivier Gascuel , 2003
"... The increase in the number of large data sets and the complexity of current probabilistic sequence evolution models necessitates fast and reliable phylogeny reconstruction methods. We describe a new approach, based on the maximumlikelihood principle, which clearly satisfies these requirements. The ..."
Abstract - Cited by 2182 (27 self) - Add to MetaCart
The increase in the number of large data sets and the complexity of current probabilistic sequence evolution models necessitates fast and reliable phylogeny reconstruction methods. We describe a new approach, based on the maximumlikelihood principle, which clearly satisfies these requirements

Regularized discriminant analysis

by Jerome H. Friedman - J. Amer. Statist. Assoc , 1989
"... Linear and quadratic discriminant analysis are considered in the small sample high-dimensional setting. Alternatives to the usual maximum likelihood (plug-in) estimates for the covariance matrices are proposed. These alternatives are characterized by two parameters, the values of which are customize ..."
Abstract - Cited by 468 (2 self) - Add to MetaCart
are customized to individual situations by jointly minimizing a sample based estimate of future misclassification risk. Computationally fast implementations are presented, and the efficacy of the approach is examined through simulation studies and application to data. These studies indicate that in many

FAST VOLUME RENDERING USING A SHEAR-WARP FACTORIZATION OF THE VIEWING TRANSFORMATION

by Philippe G. Lacroute , 1995
"... Volume rendering is a technique for visualizing 3D arrays of sampled data. It has applications in areas such as medical imaging and scientific visualization, but its use has been limited by its high computational expense. Early implementations of volume rendering used brute-force techniques that req ..."
Abstract - Cited by 542 (2 self) - Add to MetaCart
Volume rendering is a technique for visualizing 3D arrays of sampled data. It has applications in areas such as medical imaging and scientific visualization, but its use has been limited by its high computational expense. Early implementations of volume rendering used brute-force techniques

Fast Effective Rule Induction

by William W. Cohen , 1995
"... Many existing rule learning systems are computationally expensive on large noisy datasets. In this paper we evaluate the recently-proposed rule learning algorithm IREP on a large and diverse collection of benchmark problems. We show that while IREP is extremely efficient, it frequently gives error r ..."
Abstract - Cited by 1274 (21 self) - Add to MetaCart
Many existing rule learning systems are computationally expensive on large noisy datasets. In this paper we evaluate the recently-proposed rule learning algorithm IREP on a large and diverse collection of benchmark problems. We show that while IREP is extremely efficient, it frequently gives error

Implementing data cubes efficiently

by Venky Harinarayan, Anand Rajaraman, Jeffrey D. Ulman - In SIGMOD , 1996
"... Decision support applications involve complex queries on very large databases. Since response times should be small, query optimization is critical. Users typically view the data as multidimensional data cubes. Each cell of the data cube is a view consisting of an aggregation of interest, like total ..."
Abstract - Cited by 548 (1 self) - Add to MetaCart
total sales. The values of many of these cells are dependent on the values of other cells in the data cube..A common and powerful query optimization technique is to materialize some or all of these cells rather than compute them from raw data each time. Commercial systems differ mainly in their approach

The Vector Field Histogram -- Fast Obstacle Avoidance For Mobile Robots

by J. Borenstein, Y. Koren - IEEE JOURNAL OF ROBOTICS AND AUTOMATION , 1991
"... A new real-time obstacle avoidance method for mobile robots has been developed and implemented. This method, named the vector field histogram(VFH), permits the detection of unknown obstacles and avoids collisions while simultaneously steering the mobile robot toward the target. The VFH method uses a ..."
Abstract - Cited by 484 (24 self) - Add to MetaCart
A new real-time obstacle avoidance method for mobile robots has been developed and implemented. This method, named the vector field histogram(VFH), permits the detection of unknown obstacles and avoids collisions while simultaneously steering the mobile robot toward the target. The VFH method uses
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