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Highly Dynamic Destination-Sequenced Distance-Vector Routing (DSDV) for Mobile Computers

by Charles E. Perkins, Pravin Bhagwat , 1994
"... An ad-hoc network is the cooperative engagement of a collection of Mobile Hosts without the required intervention of any centralized Access Point. In this paper we present an innovative design for the operation of such ad-hoc networks. The basic idea of the design is to operate each Mobile Host as a ..."
Abstract - Cited by 2022 (8 self) - Add to MetaCart
An ad-hoc network is the cooperative engagement of a collection of Mobile Hosts without the required intervention of any centralized Access Point. In this paper we present an innovative design for the operation of such ad-hoc networks. The basic idea of the design is to operate each Mobile Host as a specialized router, which periodically advertises its view of the interconnection topology with other Mobile Hosts within the network. This amounts to a new sort of routing protocol. We have investigated modifications to the basic Bellman-Ford routing mechanisms, as specified by RIP [5], to make it suitable for a dynamic and self-starting network mechanism as is required by users wishing to utilize adhoc networks. Our modifications address some of the previous objections to the use of Bellman-Ford, related to the poor looping properties of such algorithms in the face of broken links and the resulting time dependent nature of the interconnection topology describing the links between the Mobile Hosts. Finally, we describe the ways in which the basic network-layer routing can be modified to provide MAC-layer support for ad-hoc networks.

Sequence Logos: A New Way to Display Consensus Sequences

by homas D. Schneider, Thomas D. Schneider, R. Michael Stephens - Nucleic Acids Res , 1990
"... INTRODUCTION A logo is "a single piece of type bearing two or more usually separate elements" [1]. In this paper, we use logos to display aligned sets of sequences. Sequence logos concentrate the following information into a single graphic [2]: 1. The general consensus of the sequences. ..."
Abstract - Cited by 638 (27 self) - Add to MetaCart
INTRODUCTION A logo is "a single piece of type bearing two or more usually separate elements" [1]. In this paper, we use logos to display aligned sets of sequences. Sequence logos concentrate the following information into a single graphic [2]: 1. The general consensus of the sequences

Efficient similarity search in sequence databases

by Rakesh Agrawal, Christos Faloutsos, Arun Swami , 1994
"... We propose an indexing method for time sequences for processing similarity queries. We use the Discrete Fourier Transform (DFT) to map time sequences to the frequency domain, the crucial observation being that, for most sequences of practical interest, only the first few frequencies are strong. Anot ..."
Abstract - Cited by 505 (21 self) - Add to MetaCart
We propose an indexing method for time sequences for processing similarity queries. We use the Discrete Fourier Transform (DFT) to map time sequences to the frequency domain, the crucial observation being that, for most sequences of practical interest, only the first few frequencies are strong

Multiple sequence alignment with the Clustal series of programs

by Ramu Chenna, Hideaki Sugawara, Tadashi Koike, Rodrigo Lopez, Toby J. Gibson, Desmond G. Higgins, Julie D. Thompson - Nucleic Acids Res , 2003
"... The Clustal series of programs are widely used in molecular biology for the multiple alignment of both nucleic acid and protein sequences and for preparing phylogenetic trees. The popularity of the programs depends on a number of factors, including not only the accuracy of the results, but also the ..."
Abstract - Cited by 725 (5 self) - Add to MetaCart
The Clustal series of programs are widely used in molecular biology for the multiple alignment of both nucleic acid and protein sequences and for preparing phylogenetic trees. The popularity of the programs depends on a number of factors, including not only the accuracy of the results, but also

A greedy algorithm for aligning DNA sequences

by Zheng Zhang, Scott Schwartz, Lukas Wagner, Webb Miller - J. COMPUT. BIOL , 2000
"... For aligning DNA sequences that differ only by sequencing errors, or by equivalent errors from other sources, a greedy algorithm can be much faster than traditional dynamic programming approaches and yet produce an alignment that is guaranteed to be theoretically optimal. We introduce a new greedy a ..."
Abstract - Cited by 576 (16 self) - Add to MetaCart
For aligning DNA sequences that differ only by sequencing errors, or by equivalent errors from other sources, a greedy algorithm can be much faster than traditional dynamic programming approaches and yet produce an alignment that is guaranteed to be theoretically optimal. We introduce a new greedy

Simulating Physics with Computers

by Richard Feynman, Peter W. Shor - SIAM Journal on Computing , 1982
"... A digital computer is generally believed to be an efficient universal computing device; that is, it is believed able to simulate any physical computing device with an increase in computation time of at most a polynomial factor. This may not be true when quantum mechanics is taken into consideration. ..."
Abstract - Cited by 601 (1 self) - Add to MetaCart
A digital computer is generally believed to be an efficient universal computing device; that is, it is believed able to simulate any physical computing device with an increase in computation time of at most a polynomial factor. This may not be true when quantum mechanics is taken into consideration

Computational Lambda-Calculus and Monads

by Eugenio Moggi , 1988
"... The -calculus is considered an useful mathematical tool in the study of programming languages, since programs can be identified with -terms. However, if one goes further and uses fij-conversion to prove equivalence of programs, then a gross simplification 1 is introduced, that may jeopardise the ..."
Abstract - Cited by 505 (7 self) - Add to MetaCart
the applicability of theoretical results to real situations. In this paper we introduce a new calculus based on a categorical semantics for computations. This calculus provides a correct basis for proving equivalence of programs, independent from any specific computational model. 1 Introduction This paper

The Protection of Information in Computer Systems

by Jerome H. Saltzer, Michael D. Schroeder , 1975
"... This tutorial paper explores the mechanics of protecting computer-stored information from unauthorized use or modification. It concentrates on those architectural structures--whether hardware or software--that are necessary to support information protection. The paper develops in three main sections ..."
Abstract - Cited by 815 (2 self) - Add to MetaCart
This tutorial paper explores the mechanics of protecting computer-stored information from unauthorized use or modification. It concentrates on those architectural structures--whether hardware or software--that are necessary to support information protection. The paper develops in three main

Human-Computer Interaction

by Alan Dix, Sandra Cairncross, Gilbert Cockton, Russell Beale, Robert St Amant, Martha Hause , 1993
"... www.bcs-hci.org.uk Find out what happened at HCI2004 Interacting with … music aeroplanes petrol pumps Published by the British HCI Group • ISSN 1351-119X 1 ..."
Abstract - Cited by 582 (18 self) - Add to MetaCart
www.bcs-hci.org.uk Find out what happened at HCI2004 Interacting with … music aeroplanes petrol pumps Published by the British HCI Group • ISSN 1351-119X 1

Muscle: multiple sequence alignment with high accuracy and high throughput

by Robert C. Edgar - NUCLEIC ACIDS RES , 2004
"... We describe MUSCLE, a new computer program for creating multiple alignments of protein sequences. Elements of the algorithm include fast distance estimation using kmer counting, progressive alignment using a new profile function we call the logexpectation score, and refinement using tree-dependent r ..."
Abstract - Cited by 2462 (7 self) - Add to MetaCart
We describe MUSCLE, a new computer program for creating multiple alignments of protein sequences. Elements of the algorithm include fast distance estimation using kmer counting, progressive alignment using a new profile function we call the logexpectation score, and refinement using tree
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