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25,858
Efficient exact stochastic simulation of chemical systems with many species and many channels
- J. Phys. Chem. A
, 2000
"... There are two fundamental ways to view coupled systems of chemical equations: as continuous, represented by differential equations whose variables are concentrations, or as discrete, represented by stochastic processes whose variables are numbers of molecules. Although the former is by far more comm ..."
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Cited by 427 (5 self)
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There are two fundamental ways to view coupled systems of chemical equations: as continuous, represented by differential equations whose variables are concentrations, or as discrete, represented by stochastic processes whose variables are numbers of molecules. Although the former is by far more
From genomics to chemical genomics: new developments in KEGG
- Nucleic Acids Res
, 2006
"... The increasing amount of genomic and molecular information is the basis for understanding higherorder biological systems, such as the cell and the 15 organism, and their interactions with the environment, as well as for medical, industrial and other practical applications. The KEGG resource ..."
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Cited by 529 (30 self)
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The increasing amount of genomic and molecular information is the basis for understanding higherorder biological systems, such as the cell and the 15 organism, and their interactions with the environment, as well as for medical, industrial and other practical applications. The KEGG resource
Statistical mechanics of complex networks
- Rev. Mod. Phys
"... Complex networks describe a wide range of systems in nature and society, much quoted examples including the cell, a network of chemicals linked by chemical reactions, or the Internet, a network of routers and computers connected by physical links. While traditionally these systems were modeled as ra ..."
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Cited by 2148 (11 self)
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Complex networks describe a wide range of systems in nature and society, much quoted examples including the cell, a network of chemicals linked by chemical reactions, or the Internet, a network of routers and computers connected by physical links. While traditionally these systems were modeled
Constrained model predictive control: Stability and optimality
- AUTOMATICA
, 2000
"... Model predictive control is a form of control in which the current control action is obtained by solving, at each sampling instant, a finite horizon open-loop optimal control problem, using the current state of the plant as the initial state; the optimization yields an optimal control sequence and t ..."
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Cited by 738 (16 self)
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and the first control in this sequence is applied to the plant. An important advantage of this type of control is its ability to cope with hard constraints on controls and states. It has, therefore, been widely applied in petro-chemical and related industries where satisfaction of constraints is particularly
Brain magnetic resonance imaging with contrast dependent on blood oxygenation.
- Proc. Natl. Acad. Sci. USA
, 1990
"... ABSTRACT Paramagnetic deoxyhemoglobin in venous blood is a naturally occurring contrast agent for magnetic resonance imaging (MRI). By accentuating the effects of this agent through the use of gradient-echo techniques in high fields, we demonstrate in vivo images of brain microvasculature with imag ..."
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Cited by 648 (1 self)
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to localized spectroscopy (2) and chemical shift imaging (3) that are applicable to many chemical species, MRI of water protons has been functionally extended to NMR angiography (4), perfusion imaging It has previously been demonstrated (8, 9) that the presence of deoxyhemoglobin in blood changes the proton
Complex networks: Structure and dynamics
, 2006
"... Coupled biological and chemical systems, neural networks, social interacting species, the Internet and the World Wide Web, are only a few examples of systems composed by a large number of highly interconnected dynamical units. The first approach to capture the global properties of such systems is t ..."
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Cited by 435 (12 self)
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Coupled biological and chemical systems, neural networks, social interacting species, the Internet and the World Wide Web, are only a few examples of systems composed by a large number of highly interconnected dynamical units. The first approach to capture the global properties of such systems
Approximate accelerated stochastic simulation of chemically reacting systems
- J. Chem. Phys
, 2001
"... The stochastic simulation algorithm ͑SSA͒ is an essentially exact procedure for numerically simulating the time evolution of a well-stirred chemically reacting system. Despite recent major improvements in the efficiency of the SSA, its drawback remains the great amount of computer time that is ofte ..."
Abstract
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Cited by 346 (6 self)
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The stochastic simulation algorithm ͑SSA͒ is an essentially exact procedure for numerically simulating the time evolution of a well-stirred chemically reacting system. Despite recent major improvements in the efficiency of the SSA, its drawback remains the great amount of computer time
Entropy in Communication and Chemical Systems
"... Abstract—Entropy plays a central role in communication systems. On the one hand, the objective of communication is to reduce the entropy of some random variable. On the other hand, many useful models of communication networks evolve to a state of maximum entropy given external constraints. Chemical ..."
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Cited by 4 (0 self)
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Abstract—Entropy plays a central role in communication systems. On the one hand, the objective of communication is to reduce the entropy of some random variable. On the other hand, many useful models of communication networks evolve to a state of maximum entropy given external constraints. Chemical
Benchmark Chemical Systems and Simulation Parameters
"... Performance results were measured for two chemical systems that are commonly used for MD code benchmarking, and one additional system that is characteristic for free energy perturbation (FEP) simulations. ..."
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Performance results were measured for two chemical systems that are commonly used for MD code benchmarking, and one additional system that is characteristic for free energy perturbation (FEP) simulations.
Organizing a Global Coordinate System from Local Information on an Amorphous Computer
, 1999
"... This paper demonstrates that it is possible to generate a reasonably accurate coordinate system on randomly distributed processors, using only local information and local communication. By coordinate system we imply that each element assigns itself a logical coordinate that maps to its global phy ..."
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Cited by 339 (7 self)
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physical location, starting with no apriori knowledge of position or orientation. The algorithm presented is inspired by biological systems that use chemical gradients to determine the position of cells [12]. Extensive analysis and simulation results are presented. Two key results are: there is a
Results 1 - 10
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25,858
