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peptides: additional constraints for the binding

by Gerard Eberl, Ra Sabbatini, Catherine Servis, Pedro Romero, Janet L. Maryanski, Glampietro Corradin
"... motif ..."
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Abstract not found

problem with additional constraints

by unknown authors
"... A heuristic procedure for one dimensional bin packing ..."
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A heuristic procedure for one dimensional bin packing

The geometry of algorithms with orthogonality constraints

by Alan Edelman, Tomás A. Arias, Steven T. Smith - SIAM J. MATRIX ANAL. APPL , 1998
"... In this paper we develop new Newton and conjugate gradient algorithms on the Grassmann and Stiefel manifolds. These manifolds represent the constraints that arise in such areas as the symmetric eigenvalue problem, nonlinear eigenvalue problems, electronic structures computations, and signal proces ..."
Abstract - Cited by 640 (1 self) - Add to MetaCart
In this paper we develop new Newton and conjugate gradient algorithms on the Grassmann and Stiefel manifolds. These manifolds represent the constraints that arise in such areas as the symmetric eigenvalue problem, nonlinear eigenvalue problems, electronic structures computations, and signal

Non-negative matrix factorization with sparseness constraints,”

by Patrik O Hoyer , Patrik Hoyer@helsinki , Fi - Journal of Machine Learning Research, , 2004
"... Abstract Non-negative matrix factorization (NMF) is a recently developed technique for finding parts-based, linear representations of non-negative data. Although it has successfully been applied in several applications, it does not always result in parts-based representations. In this paper, we sho ..."
Abstract - Cited by 498 (0 self) - Add to MetaCart
show how explicitly incorporating the notion of 'sparseness' improves the found decompositions. Additionally, we provide complete MATLAB code both for standard NMF and for our extension. Our hope is that this will further the application of these methods to solving novel data

Rotational Invariance as an Additional Constraint on Entanglement

by Koji Nagata, Tadao Nakamura
"... Recently, separability inequalities are derived with multiqubit states [S. M. Roy, Phys. Rev. Lett. 94, 010402 (2005)]. We introduce new kind of entanglement, which is rotationally invariant. We de-rive quadratic separability inequalities with multipartite states. The quadratic separability inequali ..."
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Recently, separability inequalities are derived with multiqubit states [S. M. Roy, Phys. Rev. Lett. 94, 010402 (2005)]. We introduce new kind of entanglement, which is rotationally invariant. We de-rive quadratic separability inequalities with multipartite states. The quadratic separability inequality can be used as a witness of rotationally invariant two-partite entanglement. We discuss that the quadratic sep-arability inequality implies standard Bell inequalities. It is also proved that when the two measured observables are assumed to precisely an-ticommute, a stronger quadratic inequality can be used as a witness of rotationally variant two-partite entanglement. We discuss that the stronger quadratic inequality implies an inequality stronger than stan-dard Bell inequalities. Our argumentations imply that standard Bell inequalities are derived under the assumption that every quantum state is rotationally invariant. We discuss the implication of anticommute along with rotational invariance. PACS: 03.67.Mn, 03.65.Ca

Additional constraints on the water chemical network

by B. Parise, P. Bergman, F. Du , 2012
"... Context. Hydrogen peroxide (HOOH) was recently detected toward ρ Oph A. Subsequent astrochemical modeling that included reactions in the gas phase and on the surface of dust grains was able to explain the observed abundance, and highlighted the importance of grain chemistry in the formation of HOOH ..."
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Context. Hydrogen peroxide (HOOH) was recently detected toward ρ Oph A. Subsequent astrochemical modeling that included reactions in the gas phase and on the surface of dust grains was able to explain the observed abundance, and highlighted the importance of grain chemistry in the formation of HOOH as an intermediate product in water formation. This study also predicted that the hydroperoxyl radical HO2, the precursor of HOOH, should be detectable. Aims. We aim at detecting the hydroperoxyl radical HO2 in ρ Oph A. Methods. We used the IRAM 30 m and the APEX telescopes to target the brightest HO2 lines at about 130 and 260 GHz. Results. We detect five lines of HO2 (comprising seven individual molecular transitions). The fractional abundance of HO2 is found to be about 10−10, a value similar to the abundance of HOOH. This observational result is consistent with the prediction of the above mentioned astrochemical model, and thereby validates our current understanding of the water formation on dust grains. Conclusions. This detection, anticipated by a sophisticated gas-grain chemical model, demonstrates that models of grain chemistry have improved tremendously and that grain surface reactions now form a crucial part of the overall astrochemical network.

Tightened Transitive Closure of Integer Addition Constraints

by Peter Revesz , 2009
"... We present algorithms for testing the satisfiability and finding the tightened transitive closure of conjunctions of addition constraints of the form ±x ± y ≤ d and bound constraints of the form ±x ≤ d where x and y are integer variables and d is an integer constrant. The running time of these algor ..."
Abstract - Cited by 1 (0 self) - Add to MetaCart
We present algorithms for testing the satisfiability and finding the tightened transitive closure of conjunctions of addition constraints of the form ±x ± y ≤ d and bound constraints of the form ±x ≤ d where x and y are integer variables and d is an integer constrant. The running time

Convex Position Estimation in Wireless Sensor Networks

by Lance Doherty , Kristofer S. J. Pister , Laurent El Ghaoui
"... A method for estimating unknown node positions in a sensor network based exclusively on connectivity-induced constraints is described. Known peer-to-peer communication in the network is modeled as a set of geometric constraints on the node positions. The global solution of a feasibility problem fo ..."
Abstract - Cited by 493 (0 self) - Add to MetaCart
for these constraints yields estimates for the unknown positions of the nodes in the network. Providing that the constraints are tight enough, simulation illustrates that this estimate becomes close to the actual node positions. Additionally, a method for placing rectangular bounds around the possible positions for all

Interactive Graph Cuts for Optimal Boundary & Region Segmentation of Objects in N-D Images

by Yuri Y. Boykov , Marie-Pierre Jolly , 2001
"... In this paper we describe a new technique for general purpose interactive segmentation of N-dimensional images. The user marks certain pixels as “object” or “background” to provide hard constraints for segmentation. Additional soft constraints incorporate both boundary and region information. Graph ..."
Abstract - Cited by 1010 (20 self) - Add to MetaCart
In this paper we describe a new technique for general purpose interactive segmentation of N-dimensional images. The user marks certain pixels as “object” or “background” to provide hard constraints for segmentation. Additional soft constraints incorporate both boundary and region information. Graph

Knowledge acquisition via incremental conceptual clustering

by Douglas H. Fisher - Machine Learning , 1987
"... hill climbing Abstract. Conceptual clustering is an important way of summarizing and explaining data. However, the recent formulation of this paradigm has allowed little exploration of conceptual clustering as a means of improving performance. Furthermore, previous work in conceptual clustering has ..."
Abstract - Cited by 765 (9 self) - Add to MetaCart
not explicitly dealt with constraints imposed by real world environments. This article presents COBWEB, a conceptual clustering system that organizes data so as to maximize inference ability. Additionally, COBWEB is incremental and computationally economical, and thus can be flexibly applied in a variety
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