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Table 5. Quantities Used in the Theoretical Treatment of Dendrimer Branching

in Quenching Dynamics of the Photoluminescence of [Ru(bpy) 3 ]
by Pendant Pamam Dendrimers, Samantha Glazier, Jason A. Barron, Nelson Morales, Amy Marie Ruschak, Paul L. Houston, Héctor D. Abruña

Table 1 Number of amines and amount of DNA on bacterial magnetic particle at different dendrimer generations

in unknown title
by unknown authors 2004
"... In PAGE 4: ... 7). Bacterial magnetic particles at successive dendrimer generations were investigated for DNA binding abilities ( Table1 ). The amine numbers double with every layer generated on the BMP surface.... ..."

Table 3: Bounds on dihedral angles. 1: The value for the down puckering of proline that ECEPP/3 uses is -68.8

in Predicting Solvated Peptide Conformations via Global Minimization of Energetic Atom-to-Atom Interactions
by J.L. Klepeis, I. P. Androulakis, M. G. Ierapetritou, C. A. Floudas 1998
"... In PAGE 46: ... In general, energy minimizations for the unsolvated peptide indicate an enormous number of local minima which represent metastable structures corresponding to partially right{hand and left{hand {helices. In initializing the algorithm the information in Table3 provides 4 initial regions for each glycine residue, or a total of 104 initial subdomains for the entire decapeptide. This was modi ed to 32 initial subdomains by combining the subdomains for each residue, and searching the entire space (-180,180) for every other glycine residue.... ..."
Cited by 6

Table 6: Variables selected for the wine dataset. Chloride Malic acid Flavanoids Proline

in unknown title
by unknown authors

Table 1 X;[(Y)(Z*)]n G4[(G3); (EA)]n G5(G3); (TRIS)]n G6(G4); (TRIS)n G7(G5); (TRIS)n

in unknown title
by unknown authors
"... In PAGE 12: ... Additional evidence was gained by observing loss of the migratory band associated with the dendrimer core reagent present in the ini- tial reaction mixture, accompanied by the formation of a higher molecular weight product, which dis- played a much shorter migratory band position on the electrophoretic gel. In fact, the molecular weights of the resulting core-shell tecto(dendrimer) could be estimated by comparing the migratory time of the core-shell product (PAGE results, Table1 ) with the migration distances of the PAMAM dendrimers (e.... In PAGE 12: ...bserved for 1:1 reaction ratios described in our earlier work [39] in this report (Fig. 11). Molecular weights for the final products were determined by MALDI-TOF-MS or (polyacry- lamide) gel electrophoresis (PAGE). They were corroborated by calculated values from AFM dimen- sion data ( Table1 ) and were found to be in relatively good agreement within this series (Table 1). Calculations based on these experimentally determined molecular weights allowed the estimation of shell filling levels for respective core-shell structures within this series.... ..."

TABLE II. Distribution of Flexible Side Chains

in Side-Chain Flexibility in Proteins Upon Ligand Binding
by Rafael Najmanovich Josef, Josef Kuttner, Vladimir Sobolev, Marvin Edelman 2000
Cited by 4

Table 2 Theoretical number of mono-dendrons, molecular weight, number of atoms and number of end groups for (3,4,5)n12Gn-COOH spherical supra- molecule. m is the number of mono-dendrons, Mw is the molecular weight of the spherical supra-molecular dendrimer. NA, number of atoms, NC, NH, NO, number of C, H and O atoms, respectively, NE, number of the end groups in supra-molecule

in 1 2 3 4 5 6 7 8
by Tahir Cagin, Guofeng Wang, Ryan Martin, Georgios Zamanakos, Nagarajan Vaidehi, T. Mainz, William A. Goddard Iii 2001

Table 4. P-values for the profile of the amino acid composition of linker sequences for every single position in the linkers. P-values less than 0.05 are represented by a gray background. The low P-values for proline in positions 6 to 11 are most con- spicuous. The classification according to the attributes hydrophobic, charged, and polar (Branden and Tooze76) does not provide a satisfactory explanation for the ob- served levels of amino acids (see also Figure 9).

in unknown title
by unknown authors 1999
"... In PAGE 14: ... Table 4 shows the P-values of the amino acids at each of the sixteen linker positions. In Table4 and Figure 9 the amino acids have been roughly grouped according to the attributes hydrophobic, charged, and polar (following the classification of Branden and Tooze83). As shown in Table 4 and Figure 9, the frequencies of the remaining amino acids in linkers are not statistically different from the database as a whole at the 5% significance level.... In PAGE 14: ... In Table 4 and Figure 9 the amino acids have been roughly grouped according to the attributes hydrophobic, charged, and polar (following the classification of Branden and Tooze83). As shown in Table4 and Figure 9, the frequencies of the remaining amino acids in linkers are not statistically different from the database as a whole at the 5% significance level. The statistical significance of the results of the computed amino acid averages can be assessed by comparing the composition of the linker sequences with random data sets of Table 3.... ..."
Cited by 3

Table 4. P-values for the profile of the amino acid composition of linker sequences for every single position in the linkers. P-values less than 0.05 are represented by a gray background. The low P-values for proline in positions 6 to 11 are most con- spicuous. The classification according to the attributes hydrophobic, charged, and polar (Branden and Tooze76) does not provide a satisfactory explanation for the ob- served levels of amino acids (see also Figure 9).

in Studying Macromolecular Motions in a Database Framework: From Structure to Sequence
by Mark Gerstein, Ronald Jansen, Ted Johnson, Jerry Tsai, Werner Krebs 1999
"... In PAGE 14: ... Table 4 shows the P-values of the amino acids at each of the sixteen linker positions. In Table4 and Figure 9 the amino acids have been roughly grouped according to the attributes hydrophobic, charged, and polar (following the classification of Branden and Tooze83). As shown in Table 4 and Figure 9, the frequencies of the remaining amino acids in linkers are not statistically different from the database as a whole at the 5% significance level.... In PAGE 14: ... In Table 4 and Figure 9 the amino acids have been roughly grouped according to the attributes hydrophobic, charged, and polar (following the classification of Branden and Tooze83). As shown in Table4 and Figure 9, the frequencies of the remaining amino acids in linkers are not statistically different from the database as a whole at the 5% significance level. The statistical significance of the results of the computed amino acid averages can be assessed by comparing the composition of the linker sequences with random data sets of Table 3.... ..."
Cited by 3

Table 3: List of conserved proteolytic sites. The first column indicates the number of organisms in which the site was observed. The next three columns tell the name of the protein containing the site and the position (in parentheses) of the cleavage site within the protein. The last column indicates if the site is actually a cut between arginine and proline (denoted by R.P), or a signal peptide cleavage site.

in Comparative Proteogenomics: Combining Mass Spectrometry and Comparative Genomics to Analyze Multiple Genomes
by Nitin Gupta, Jamal Benhamida, Vipul Bhargava, Daniel Goodman, Elisabeth Kain, Ian Kerman, Ngan Nguyen, Noah Ollikainen, Jesse Rodriguez, Jian Wang, Mary S. Lipton, Margaret Romine, Andrei Osterman, Vineet Bafna, Richard D. Smith, Pavel A. Pevzner
"... In PAGE 11: ... To check whether some of these sites are conserved between multiple organisms, we map them on the alignment of orthologous protein. 37 proteolytic sites are found conserved between two or more organisms (see Table3 ). This is a significantly larger number of conserved sites than expected by chance.... ..."
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