Boojala V.B. Reddy, Wilfred W. Li, Ilya N. Shindyalov, Philip E. Bourne  Home/Search
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Abstract: Anall-against-allproteinstructurecomparisonusingtheCombinatorialExtension (CE)algorithmappliedtoarepresentativesetof PDBstructuresrevealedagalleryofcommonsubstructuresinproteins (http://cl.sdsc.edu/ce.html). Thesesubstructuresrepresentcommonlyidentified folds,domains,orcomponentsthereof.Mostofthe subsequencesformingthesesimilarsubstructures havenosignificantsequencesimilarity.Wepresent amethodtoidentifyconservedaminoacidpositions andresidue-dependentpropertyclusterswithin... (Update)
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BibTeX entry: (Update)
@misc{ reddy-conserved,
author = "Boojala V.B. Reddy and Wilfred W. Li and Ilya N. Shindyalov and Philip
E. Bourne",
title = "Conserved Key Amino Acid Positions (CKAAPs) Derived From the Analysis of
Common Substructures in Proteins",
url = "citeseer.ist.psu.edu/reddy00conserved.html" }
Citations (may not include all citations):266 Gapped BLAST and PSI-BLAST: a new generation of protein data.. - SF, TL et al. - 1997
94 Dictionary of protein secondary structure: pattern recogniti.. (context) - Kabsch, Sander - 1983
37 CATH---a hierarchic classification of protein domain structu.. (context) - CA, AD et al. - 1997
35 Protein structure alignment by incremental combinatorial ext.. (context) - IN, PE - 1998
33 Enlarged representative set of protein structures (context) - Hobohm, Sander - 1994
27 The interpretation of protein structures: estimation of stat.. (context) - Lee - 1971
24 The relation between the divergence of sequence and structur.. (context) - Chothia - 1986
21 Classification of amino acid conservation (context) - WR - 1986
18 Critical assessment of methods of protein structure predicti.. (context) - Moult, Hubbard et al. - 1999
15 Twilight zone of protein sequence alignments - Rost - 1999
14 Definition of general topological equivalence in protein str.. (context) - Sali - 1990
12 Prediction of protein secondary structure and active sites u.. (context) - MJ, GJ et al. - 1987
11 Structural features can be unconserved in proteins with simi.. (context) - RB, GJ - 1994
9 Conserved residues and the mechanism of protein folding (context) - EI, VI - 1996
9 How evolution makes proteins fold quickly (context) - LA, VI et al. - 1998
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