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Sequence Analysis on a 216-Processor Beowulf Cluster (2000)  (Make Corrections)  
Katerina Michalickova University of Toronto and Samuel Lunenfeld Research...



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Abstract: In this work we describe the implementation of a 216processor Beowulf cluster with switched gigabit Ethernet networking. This design includes the use of a 8-CPU high performance midrange computer with 8 gigabit ports as a cluster head, a design that limits I/O contention. We have been developing applications software for bioinformatics research in protein folding, as well as the MoBiDiCK system for managing cluster applications that is extensible to general purpose distributed computing. In... (Update)

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BibTeX entry:   (Update)

@inproceedings{ michalickovasequence,
    author = "Katerina Michalickova and Moyez Dharsee and Christopher W. V. Hogue",
    title = "Sequence Analysis on a {216-Processor} Beowulf Cluster",
    pages = "111--120",
    url = "citeseer.ist.psu.edu/698241.html" }
Citations (may not include all citations):
431   Basic local alignment search tool (context) - SF, Miller et al. - 1990
266   Gapped BLAST and PSI-BLAST: a new generation of protein data.. - SF, TL et al. - 1997
240   Identification of common molecular subsequences - TF, MS - 1981
28   Assembly of protein tertiary structures from fragments with .. - KT, Huang et al. - 1997
28   Surprising similarities in structure comparison (context) - Gibrat, Bryant - 1996
1   MoBiDiCK: A Tool for Distributed Computing on the Internet - Dharsee, Hogue - 2000
1   A Fast Method to Sample Real Protein Coformational Space (context) - Feldman, Hogue - 2000
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