Lars Nyland, Jan PRINS, RU HUAI YUN, JAN HERMANS, HYE-CHUNG KUM, LEI WANG  Home/Search
Context Related
| unc.edu/~prins/Publications...jpdc97.ps Cached: PS.gz PS PDF This document uses CoBlitz to cache paper downloads. If your firewall is blocking outgoing connections to port 3125, you can use these links to download local copies.
Image Update HelpPS.gz PS PDF From: unc.edu/~prins/Publicatio...index (more) (Enter author homepages) |
Rate this article:      (best)Comment on this article |
Abstract: . To achieve scalable parallel performance in Molecular Dynamics Simulations, we have modeled and implemented several dynamic spatial domain decomposition algorithms. The modeling is based upon the Bulk Synchronous Parallel architecture model (BSP), which describes supersteps of computation, communication, and synchronization. Using this model, we have developed prototypes that explore the differing costs of several spatial decomposition algorithms, and then use this data to drive... (Update)
Context of citations to this paper: More
.... and second, when remote data must be retrieved, it is very likely that it will be used many times, amortizing the cost of remote access [19]. Figure 6 shows scaling characteristics of a parallel version of Sigma on the SGI O2000. The graph shows performance on two different...
Cited by: More
A Virtual Environment for Steered Molecular Dynamics - Prins, Hermans, Mann.. (1999) (Correct)
Similar documents (at the sentence level):
20.7%: Modeling Dynamic Load Balancing in Molecular Dynamics to.. - Lars Nyland Jan (Correct)
Active bibliography (related documents): More All
0.5: The Theory, Practice, And A Tool For BSP Performance.. - Hill, Crumpton, Burgess (1996) (Correct)
0.2: Conformational Dynamics Simulations of Proteins - Eichinger, Heymann, Heller.. (Correct)
0.2: Ego - An Efficient Molecular Dynamics Program And Its.. - Eichinger, Heller.. (2000) (Correct)
Similar documents based on text: More All
0.2: Software Issues In High-Performance Computing And A.. - Peter Mills Lars (1994) (Correct)
0.2: SMD: Visual Steering of - Molecular Dynamics For (Correct)
0.1: Time Domain Calculations of the Second-Order Drift Force on a .. - Prins, Hermans (1994) (Correct)
BibTeX entry: (Update)
L. Nyland, J. Prins, R.H. Yun, J. Hermans, H.-C. Kum, L. Wang, "Achieving Scalable Parallel Molecular Dynamics Using Domain Decomposition Techniques", Journal of Parallel and Distributed Computing 47(2):125--138, 1997. http://citeseer.ist.psu.edu/nyland97achieving.html More
@article{ nyland97achieving,
author = "Lars Nyland and Jan Prins and Ru Huai Yun and Jan Hermans and Hye-Chung Kum and Lei Wang",
title = "Achieving Scalable Parallel Molecular Dynamics Using Dynamic Spatial Domain Decomposition Techniques",
journal = "Journal of Parallel and Distributed Computing",
volume = "47",
number = "2",
pages = "125--138",
year = "1997",
url = "citeseer.ist.psu.edu/nyland97achieving.html" }
Citations (may not include all citations):735 A bridging model for parallel computation (context) - Valiant - 1990
60 Scientific computing on bulk synchronous parallel architectu.. - Bisseling, McColl - 1994
38 Numerical integration of the cartesian equations of motion o.. (context) - Ryckaert, Ciccotti et al. - 1977
29 Parallelizing molecular dynamics using spatial decomposition - Clark, Hanxleden et al. - 1994
17 object-oriented molecular dynamics program (context) - Nelson, Humphrey et al.
13 Scalable variants of multipole-accelerated algorithms for mo.. - Board, Ziyad et al. - 1994
10 Parallelizing molecular dynamics programs for distributed me.. (context) - Hwang, Das et al. - 1994
8 SMD: Visual steering of molecular dynamics for protein desig.. - Leech, Prins et al. - 1996
6 Particle mesh ewald: An n log (context) - Darden, York et al. - 1993
4 Biomolecular dynamics at long timesteps: Bridging the time s.. (context) - Schlick, Barth et al. - 1997
2 AMBER -- molecular dynamics (context) - Case, Greenberg et al. - 1995
2 An Initial Proposal for the BSP Worldwide Standard Library (context) - Hill, McColl
1 Analysis of MD simulations using bulk synchronous parallel a.. (context) - Kum, Wang - 1996
Documents on the same site (http://www.cs.unc.edu/~prins/Publications/index.html): More
Connected Components Algorithms For Mesh-Connected.. - Goddard, Kumar, Prins (1995) (Correct)
Software Issues In High-Performance Computing And A.. - Peter Mills Lars (1994) (Correct)
Work-Efficient Nested Data-Parallelism - Daniel Palmer And (1995) (Correct)
Online articles have much greater impact More about CiteSeer.IST Add search form to your site Submit documents Feedback
CiteSeer.IST - Copyright Penn State and NEC