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Inferring Relatedness of a Macromolecule to a Sequence Database Without Sequencing (1996)  (Make Corrections)  (1 citation)
Jin Kim, James R Cole, Eric Torng Sakti Pramanik Department of Computer...



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Abstract: Derivation of biological information of a macromolecule isolate based on sequence similarity is playing a significant role in numerous areas of biological research. However, it is often the case that a researcher obtains more macromolecule isolates than can be sequenced practically, due either to the high cost of sequencing or lack of specialized equipment and personnel. To overcome this difficulty, we study the problem of obtaining biological information (such as sequence information) about a... (Update)

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...described before. It can be skipped in a first reading. 1. 3 Formal Definitions Most definitions in this section are based on those in [KCTP96] Nevertheless, we use more definitions to facilitate the communication. Definition 1.1. The restriction map RM e (g) for the DNA...

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BibTeX entry:   (Update)

Jin Kim, James R. Cole, Eric Trong, and Sakti Pramanik. Inferring relatedness of a macromolecule to a sequence database without sequencing. In Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, pages 125--133, June 1996. http://citeseer.ist.psu.edu/kim96inferring.html   More

@inproceedings{ kiminferring,
    author = "Jin Kim and James R. Cole and Eric Torng and Sakti Pramanik",
    title = "Inferring Relatedness of a Macromolecule to a Sequence Database Without Sequencing",
    pages = "125--133",
    url = "citeseer.ist.psu.edu/kim96inferring.html" }
Citations (may not include all citations):
431   Basic local alignment search tool (context) - Altschul, Gish et al. - 1990
155   Improved tools for biological sequence comparison (context) - --, Lipman - 1988
4   Phylogenies from restriction sites: a maximum-likelihood app.. (context) - Felsenstein - 1992
4   Protein identification by mass profile fingerprinting (context) - James, Quadroni et al. - 1993
4   Mathematical model for studying genetic variation in terms o.. (context) - Nei, Li - 1979
3   Construction of restriction maps (context) - Bellon - 1988
2   Automatic construction of restriction site maps (context) - Pearson - 1982
1   An efficient program to construct restriction maps from expe.. (context) - Durand, Bregegere - 1984
1   The ribosomal database project (context) - Physical, -- et al. - 1994
1   Improved algorithms for searching restriction maps (context) - Res, Miller et al. - 1991
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1   An algorithm for searching restriction maps (context) - Miller, Ostell et al. - 1990
1   Mapping dna by stochastic relaxation: a new approach to frag.. (context) - order, restriction et al. - 1990
1   Estimation of diversity and community structure through rest.. (context) - Moyer, Dobbs et al. - 1993
1   Phylogenetic analysis of restriction site data (context) - Holsinger, Jansen - 1993
1   Complete nucleotide sequence of a 16s ribosomal rna gene (context) - --, Palmer et al. - 1978
1   Protein identification by peptide mass fingerprinting (context) - Cottrell - 1994
1   Cladistic analysis of restriction endonuclease cleavage maps.. (context) - DeBry, Slade - 1985
1   Rapid identification of proteins (context) - Shaw - 1993
1   Computerassisted restriction mapping: an integrated approach.. (context) - Acad, USA et al. - 1994

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