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  using a pattern graph

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by Inge Jonassen, Inge Jonassen
ftp://ftp.ii.uib.no/pub/bio/papers/Pratt2_graph.ps
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Abstract:

Efficient discovery of conserved patterns

Citations

526 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res – Thompson, Higgins, et al. - 1994
300 The SWISS-PROT protein sequence data bank and its supplement TrEMBL – Bairoch, Apweiler - 1997
176 Finding pattern common to a set of strings – Angluin - 1980
103 Approaches to the automatic discovery of patterns in biosequences – Brazma, Jonassen, et al. - 1998
99 Protein structure alignment – Taylor, Orengo - 1989
82 The PROSITE database, its status in – Bairoch, Bucher, et al. - 1997
54 Finding flexible patterns in unaligned protein sequences – Jonassen, Collins, et al. - 1995
35 Automatic generation of primary sequence patterns form sets of related protein sequences – Smith, Smith - 1990
34 Detecting patterns in protein sequences – Neuwald, Green - 1994
29 Finding sequence motifs in groups of functionally related proteins – Smith, Annau, et al. - 1990
26 Methods for discovering novel motifs in nucleic acid sequences – Staden - 1989
25 A search for common patterns in many sequences – Roytberg - 1992
11 MPsrch version 1.3 – Sturrock, Collins - 1993