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Development of Molecular Dynamics Simulation System for Large-Scale Supra-Biomolecules, PABIOS (PArallel BIOmolecular Simulator) (2003)  (Make Corrections)  
Hisashi Ishida, Yasumasa Joti, et al.



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Abstract: ratio of 50.5%, and a vectorization ratio of 96.9% even when 18 nodes (144 CPUs) were used. Keywords: large-scale supra-biomolecular MD simulation, PPPM method, domain decomposition method, Holliday junction 1. Introduction Molecular dynamics simulation not only provides dynamic descriptions of molecules on the atomic scale, but also adds valuable information for interpreting experimental data. The rapid development of computer power and the elucidation of the structures of biological... (Update)

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BibTeX entry:   (Update)

@misc{ ishida-development,
  author = "Hisashi Ishida and Yasumasa Joti and et al.",
  title = "Development of Molecular Dynamics Simulation System for Large-Scale Supra-Biomolecules,
    PABIOS (PArallel BIOmolecular Simulator)",
  url = "citeseer.ist.psu.edu/ishida03development.html" }
Citations (may not include all citations):
156   Computer Simulation Using Particles (context) - Hockney, Eastwood - 1981
120   CHARMM: A Program for Macromolecular Energy (context) - Brooks, Bruccoleri et al. - 1983
7   GROMOS: GROningen MOlecular Simulation software (context) - van Gunsteren, Berendsen - 1988
3   A domain decomposition parallelization strategy for molecula.. (context) - Brown, Clarke et al. - 1993
2   a computer program for applying molecular mechanics (context) - Pearlman, Case et al. - 1995
1   PRESTO: A vectorized molecular mechanics program for biopoly.. (context) - Morikami, Nakai et al. - 1992

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