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Abstract: MapBase is a database that stores information about short DNA sequences called markers and about the positions of markers along the chromosomes of an organism. It also stores information about experimental steps carried out on the markers. For modeling and performance reasons, we built MapBase on top of a C++-based object-oriented database management system. We describe MapBase's design, and examine the requirements that, together with the underlying database management system, have shaped it.... (Update)
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.... Our design of LabBase was heavily influenced by our experience developing and operating a previous laboratory database, MapBase [11, 12]. Like LabBase, MapBase is constructed in ObjectStore. However, unlike LabBase, MapBase models each experimental step as a separate C...
...this example, the material is the potential genetic marker, and the steps correspond to the actions 1 through 4. Our experiences with MapBase [3, 4, 2], as well as other literature on laboratory information systems [5, 6] suggest that the notions of material and step are...
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0.3: A Glimpse at the DBMS Challenges Posed by the Human Genome.. - Nathan Goodman (1994) (Correct)
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BibTeX entry: (Update)
Nathan Goodman, Steve Rozen, and Lincoln Stein. Requirements for a deductive query language in the MapBase genome-mapping database. In Raghu Ramakrishnan, editor, Applications of Logic Databases, pages 259--278. Kluwer, 1994. ftp://genome.wi.mit.edu/pub/papers/Y1994/requirements.ps. http://citeseer.ist.psu.edu/goodman94requirements.html More
@inproceedings{ goodman93requirements,
author = "Nathan Goodman and Steve Rozen and Lincoln Stein",
title = "Requirements for a Deductive Query Language in the {MapBase} Genome-Mapping Database",
booktitle = "Workshop on Programming with Logic Databases (Informal Proceedings), {ILPS}",
pages = "18-32",
year = "1993",
url = "citeseer.ist.psu.edu/goodman94requirements.html" }
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295 The ObjectStore database system (context) - Lamb, Landis et al. - 1991
104 Communications of the ACM (context) - Deux, system - 1991
102 The GemStone object database management system (context) - Butterworth, Otis et al. - 1991
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39 Oxford University Press (context) - Lewin - 1994
39 Design and implementation of the Glue-Nail database system - Derr, Morishita et al. - 1993
33 Adding object-orientation to a logic database language (context) - Srivastava, Ramakrishnan et al. - 1993
20 An object oriented DBMS war story: Developing a genome mappi.. (context) - Goodman - 1994
20 a short overview (context) - Vieille, Bayer et al. - 1990
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8 Declarative database visualization: Recent papers from the H.. (context) - Mendelzon - 1993
6 Constructing a domain-specific DBMS using a persistent objec.. - Rozen, Stein et al. - 1994
6 Splicing UNIX into a genome mapping laboratory - Stein, Marquis et al. - 1994
6 Manual set for ObjectStore Release (context) - Design, Burlington et al. - 1993
6 The design of MapBase: An object oriented database for genom.. (context) - Goodman, Reeve et al. - 1992
4 PRIMER: a computer program for automatically selecting PCR p.. (context) - Lincoln, Daly et al. - 1991
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4 Three Burlington Woods (context) - Inc - 1992
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3 An Aditi implementation of a flights database - Harland, Ramamohanarao - 1993
3 VERSANT Object Database Management System Release 2 System M.. (context) - Technology, Bohannon et al. - 1993
2 Talk presented at ObjectStore Northeast users group meeting (context) - O'Brien, product et al. - 1994
2 The Oject Database Standard: ODMG (context) - Cattell, Atwood et al. - 1994
1 Objectoriented database with rule-based query interface for .. (context) - Goto, Sakamoto et al. - 1993
1 Available at URL ftp://genome (context) - Rozen, Stein et al.
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1 Dharma Systems Inc (context) - proprietary, paper
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The graph only includes citing articles where the year of publication is known.
Documents on the same site (http://www-genome.wi.mit.edu/informatics_papers/bibliography.html): More
Splicing UNIX into a Genome Mapping Laboratory - Stein, Marquis, Dredge.. (1994) (Correct)
A Glimpse at the DBMS Challenges Posed by the Human Genome.. - Nathan Goodman (1994) (Correct)
Workflow Management Software for Genome-Laboratory Informatics - Goodman, Rozen, Stein (1995) (Correct)
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