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Abstract: is just a string of amino acids. This string arranges itself in a process called protein folding into a complex three-dimensional structure capable of exerting the function of the specific protein. We will briefly review the fundamental building blocks of proteins, their primary and secondary structure (for references, see [1]). Amino Acids---Building Blocks of Proteins There are 20 different amino acids. The basic chemical composition common to all 20 amino acids is shown in Figure 2... (Update)

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Computational Biology and Language - Madhavi Ganapathiraju Narayanas (2005)   (Correct)

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3:   Html In Silico Biol (context) - http, Scsb et al. - 2004
2:   Tsonis, A.A., J.B. Elsner, and P.A. Tsonis, Is DNA a language? J Theor Biol, 1997. 184(1): p. 25-9.
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BibTeX entry:   (Update)

Ganapathiraju, M and Klein-Seetharaman, J and Balakrishnan, N and Reddy, R: "Characterization of Protein Secondary Structure Using Latent Semantic Analysis. " IEEE Signal Processing magazine, May 2004 issue 15 (2004) 78-87 http://citeseer.ist.psu.edu/ganapathiraju04characterization.html   More

@misc{ ganapathiraju04characterization,
  author = "M. Ganapathiraju and J. Klein-Seetharaman and N. Balakrishnan and R. Reddy",
  title = "Characterization of Protein Secondary Structure Using Latent Semantic Analysis",
  text = "Ganapathiraju, M and Klein-Seetharaman, J and Balakrishnan, N and Reddy,
    R: Characterization of Protein Secondary Structure Using Latent Semantic
    Analysis.  IEEE Signal Processing magazine, May 2004 issue 15 (2004) 78-87",
  year = "2004",
  url = "citeseer.ist.psu.edu/ganapathiraju04characterization.html" }
Citations (may not include all citations):
111   Introduction to latent semantic analysis (context) - Landauer, Foltx et al. - 1998
27   Lattice statistical mechanics model of the conformational an.. (context) - Lau, Dill - 1989
19   Analysis of the accuracy and implications of simple methods .. (context) - Garnier, Osguthorpe et al. - 1978
16   Prediction of the secondary structure of proteins from their.. (context) - Chou, Fasman - 1978
13   Exploiting latent semantic information in statistical langua.. (context) - Bellegarda - 2000
8   JPred: A consensus secondary structure prediction server (context) - Cuff, Clamp et al. - 1998
7   Review: Protein secondary structure Prediction continues to .. - Rost - 2001
6   Further developments of protein secondary structure predicti.. (context) - Gibrat, Garnier et al. - 1987
5   Compact polymers (context) - Chan, Dill - 1989
4   Bayesian segmentation of protein secondary structure - Schmidler, Liu et al. - 2000
3   A computational approach to simplifying the protein folding .. (context) - Wang, Wang - 1999
2   Reduction of protein sequence complexity by residue grouping (context) - Li, Fan et al. - 2003
1   New York: Wiley (context) - Voet, Voet et al. - 1995
1   Stabilizing nonpolar /polar side-chain interactions in the a.. (context) - Andrew, Penel et al. - 2001
1   Aromatic side-chain interactions in proteins. I. Main struct.. (context) - Thomas, Meurisse et al. - 2002
1   the significance of alternating patterns of polar and non-po.. (context) - Mandel-Gutfreund, Gregoret - 2002
1   Aromatic side-chain interactions in proteins. II. Near- and .. (context) - Thomas, Meurisse et al. - 2002
1   Electronic properties of the amino acid side chains contribu.. (context) - Dwyer - 2001
http://us.expasy.org/cgi-bin/protscale.pl
http://www.netlib.org/svdpack/
http://www.scsb.utmb.edu/comp_biol.html/venkat/prop.html

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