See this document in CiteSeerX!

Combinatorial Methods in Comparative Genomics (2003)  (Make Corrections)  
Niklas Eriksen



  Home/Search   Context   Related

 
View or download:
lib.kth.se/Fulltext...ERIKSEN030509.PDF
Cached:  PS.gz  PS  PDF   Image  Update  Help

From:  lib.kth.se/Fulltext/ (more)
(Enter author homepages)

Rate this article: (best)
  Comment on this article  
(Enter summary)

Abstract: To understand evolution, and to discover how di#erent species are related, gene order analysis is a useful tool. Problems in this area can usually be formulated in a combinatorial language. We regard genomes as signed, circular permutations, and evolutionary operations like reversals (reversing the order of a segment of genes) and transpositions (moving a segment of genes) are easy to describe combinatorially. A commonly studied problem is to determine the evolutionary distance between two... (Update)

Active bibliography (related documents):   More   All
0.5:   A Fixpoint Approach to Second-Order Quantifier Elimination.. - Nonnengart, Szalas (1995)   (Correct)
0.3:   On the Properties of Sequences of Reversals that.. - Bergeron, Chauve.. (2002)   (Correct)
0.3:   Genome Rearrangements and Sequencing By Hybridization - Hartman (2001)   (Correct)

Similar documents based on text:   More   All
1.4:   Generalizations of Szegö Limit Theorem: Higher Order Terms and.. - Gioev (2001)   (Correct)
1.1:   On the Design and Deployment of Low-cost Wireless Infrastructure - Unbehaun (2002)   (Correct)
1.1:   Topics in Soft Computing - Keukelaar (2002)   (Correct)

BibTeX entry:   (Update)

@misc{ eriksen-combinatorial,
  author = "Niklas Eriksen",
  title = "Combinatorial Methods in Comparative Genomics",
  url = "citeseer.ist.psu.edu/eriksen03combinatorial.html" }
Citations (may not include all citations):
151   Cambridge University Press (context) - Stanley, combinatorics - 1999
151   Cambridge University Press (context) - Stanley, combinatorics - 1997
61   Department of Computer Science (context) - Christie, problems et al. - 1998
15   Cambridge University Press (context) - Aldridge, of et al. - 1996
12   approximation algorithm for sorting by reversals - Berman, Hannenhalli et al. - 2001
9   Comparative genomics: Empirical and analytical approaches to.. (context) - Sankoff, Nadeau - 2000
4   Johann Ambrosius Barth Verlag (context) - Cvetkovi, Michael et al. - 1995
3   approximation of sorting by reversals and transpositions (context) - Eriksen - 2002
3   Tarjan: Faster and simpler algorithm for sorting signed perm.. (context) - Kaplan, Shamir - 1997
2   Mathematische Annalen (context) - Ackermann, Aufbau et al. - 1928
1   Algorithms in Bioinformatics (context) - Wang, phylogeny et al. - 2002
1   Tandy Warnow: Steps toward accurate reconstructions of phylo.. (context) - Moret, Tang et al. - 2002
1   Tandy Warnow: Fast phylogenetic methods for the analysis of .. (context) - Wang, Jansen et al. - 2002
1   Tao Liu: Inversion medians outperform breakpoint medians in .. (context) - Moret, Siepel et al. - 2002
1   Stacia Wyman: New approaches for reconstructing phylogenies .. (context) - Moret, Wang et al. - 2001
1   Andersson: Measuring genome divergence in bacteria: A case s.. (context) - Dalevi, Eriksen et al. - 2002
1   Graeme Mitchison: Biological sequence analysis (context) - Durbin, Eddy et al. - 1998
1   Master's thesis (context) - Elvers, trees et al. - 2001
1   Laura Herbon: Plant mitochondrial DNA evolves rapidly in str.. (context) - Palmer - 1988
1   Ron Shamir: The median problems for breakpoints are NP- comp.. (context) - Pe'er - 1998
1   Axel Hultman: Expected reflection distance in G (context) - Eriksen - 2003
1   Jonas Sj ostrand: Expected inversion number after k adjacent.. (context) - Eriksson, Eriksson - 2000
1   Leslie Foulds: Comparison of phylogenetic trees (context) - Robinson - 1981
1   Improved sorting by block transpositions (context) - Eriksson, Eriksson et al. - 2001
1   Mathieu Blanchette: Multiple genome rearrangement and breakp.. (context) - Sankoff - 1998
1   Nadia El-Mabrouk: Exploring the set of all minimal sequences.. (context) - Ajana, Lefebvre et al. - 2002
1   Mi Yan: A linear-time algorithm for computing inversion dist.. (context) - Bader, Moret - 2001
1   David Sankoff: Parametric genome rearrangement (context) - Blanchette, Kunisawa - 1996
1   Pavel Pevzner: Genome rearrangements and sorting by reversal.. (context) - Bafna - 1996
1   David Sankoff: Gene order breakpoint evidence in animal mito.. (context) - Blanchette, Kunisawa - 1999
1   Pavel Pevzner: Sorting by transpositions (context) - Bafna - 1998
1   Pavel Pevzner: Genome-scale evolution: Reconstructing gene o.. (context) - Bourque - 2002
1   Jens Stoye: Common intervals and sorting by reversals: A mar.. (context) - Bergeron, Heber - 2002
1   Sridhar Hannenhalli: Fast sorting by reversals (context) - Berman - 1996
1   SIAM Journal of Discrete Mathematics (context) - Caprara, by et al. - 1999
1   Bernard Moret: Finding an optimal inversion median: Experime.. (context) - Siepel - 2001
1   Tandy Warnow: Solving large scale phylogenetic problems usin.. (context) - Huson, Vawter - 1999
1   Algorithms in Bioinformatics (context) - Caprara, practical et al. - 2001
1   Marek Karpinski: On some tighter inapproximability results (context) - Berman - 1999
1   Mathematical Journal of Okayama University (context) - Ito, of et al. - 1984
1   Ronald Rivest: Introduction to algorithms (context) - Cormen, Leiserson - 1990
1   Lyle McGeoch: The traveling salesman problem: a case study (context) - Johnson - 1997
1   Pavel Pevzner: Transforming cabbage into turnip (context) - Hannenhalli - 1999
1   Hal Sudborough: A 2-approximation algorithm for genome rearr.. (context) - Gu, Peng - 1999
1   Richard Collins: Genome rearrangement by replication-directe.. (context) - Tillier - 2000
1   Macdonald: Symmetric functions and Hall polynomials (context) - Ian - 1995
1   Emma Troili: Forvantade avstand i Coxetergrupper (context) - Forvantade, Expected et al. - 2002
1   Stacia Wyman: A new fast heuristic for computing the breakpo.. (context) - Cosner, Jansen et al. - 2000
1   Tandy Warnow: Estimating true evolutionary distances between.. (context) - Wang - 2001
1   Mi Yan: A new implementation and detailed study of breakpoin.. (context) - Moret, Bader et al. - 2001

Documents on the same site (http://www.lib.kth.se/Fulltext/):   More
Time- and space-resolved spectroscopy at the EXTRAP-T2.. - Sallander   (Correct)
Co-Rotational Beam Elements in Instability Problems - Battini (2002)   (Correct)
Experimental Studies of Zero Pressure-Gradient Turbulent.. - Österlund (1999)   (Correct)

Online articles have much greater impact   More about CiteSeer.IST   Add search form to your site   Submit documents   Feedback  

CiteSeer.IST - Copyright Penn State and NEC