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Abstract: Several methods have been developed for identifying more or less complex RNA structures in a genome. Whatever the method is, it is always based on the search of conserved primary and secondary structures. While various efficient methods have been developed for searching motifs of the primary structure, usually represented as regular expressions, few effort has been expended in the efficient search of secondary structure signals. By a helix, we mean a stem-loop structure defined by a combination ... (Update)
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BibTeX entry: (Update)
@misc{ el-mabrouk-approximate,
author = "Nadia El-Mabrouk and Mathieu Raffinot",
title = "Approximate Matching of Secondary Structures",
url = "citeseer.ist.psu.edu/el-mabrouk01approximate.html" }
Citations (may not include all citations):148 The theory and computation of evolutionary distances: patter.. (context) - Sellers - 1980
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45 Approximate matching of regular expressions (context) - Myers, Miller - 1989
10 Approximate matching of network expression with spacers - Myers - 1996
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2 Flexible identication of structural objects in nucleic acid .. (context) - Sagot, Viari - 1997
2 Very fast identication of RNA motifs in genomic DNA (context) - El-Mabrouk, Lisacek - 1996
2 An ancestral mitochondrial dna resembling a eubacterial geno.. (context) - Lang, Burger et al. - 1997
1 Homologs of small nucleolar RNAs in archaea (context) - Omer, Lowe et al. - 2000
1 Automatic identication of group I introns cores in genomic D.. (context) - Lisacek, Diaz et al. - 1994
http://bioweb.pasteur.fr/docs/man/man/rnabob.1.html#toc1
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