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Challenges in Integrating Biological Data Sources (1995)  (Make Corrections)  (17 citations)
S.B. Davidson, C. Overton, P. Buneman
Journal of Computational Biology



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Abstract: this report, we examine the technical challenges to integration, critique the available tools and resources, and compare the cost and advantages of various methodologies. We begin by analyzing the basic steps in strict and complete integration: 1) transformation of the various schemas to a common data model; 2) matching of semantically related schema objects; 3) schema integration; 4) transformation of data to the federated database on demand; and 5) matching of semantically equivalent data.... (Update)

Cited by:   More
Data Provenance: Some Basic Issues - Peter Buneman Sanjeev (2000)   (Correct)
Technologies for Integrating Biological Data - Wong (2002)   (Correct)
An Examination of DSLs for Concisely Representing Model.. - Gray, Karsai (2003)   (Correct)

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0.4:   Semantics of Database Transformations - Davidson, Buneman, Kosky (1995)   (Correct)
0.3:   BioKleisli: A Digital Library for Biomedical Researchers - Davidson, Overton, Tannen.. (1997)   (Correct)
0.3:   Reconfigurable Web Wrapper Agents for Biological.. - Hsu, Chang, Hsieh..   (Correct)

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3:   A data transformation system for biological data sources - Buneman, Davidson et al. - 1995
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BibTeX entry:   (Update)

S.B. Davidson, C. Overton, and P. Buneman. Challenges in integrating biological data sources. J. Computational Biology 2, 1995. http://citeseer.ist.psu.edu/davidson95challenges.html   More

@article{ davidson95challenges,
    author = "Susan Davidson and G. Christian Overton and Peter Buneman",
    title = "Challenges in Integrating Biological Data Sources",
    journal = "Journal of Computational Biology",
    volume = "2",
    number = "4",
    pages = "557--572",
    year = "1995",
    url = "citeseer.ist.psu.edu/davidson95challenges.html" }
Citations (may not include all citations):
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90   Distributed Databases: Principles and Systems (context) - Ceri, Pelagatti - 1984
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82   Superviews: Virtual integration of multiple databases (context) - Motro - 1987
74   Relative information capacity of simple relational database .. (context) - Hull - 1986
54   A data transformation system for biological data sources - Buneman, Davidson et al. - 1995
53   Suitability of data models as canonical models for federated.. - Saltor, Castellanos et al. - 1991
52   Specifying interdatabase dependencies in a multidatabase env.. (context) - Rusinkiewicz, Sheth et al. - 1991
40   A methodology for data schema integration in the entity-rela.. (context) - Batini, Lenzerini - 1984
39   Restructuring hierarchical database objects (context) - Abiteboul, Hull - 1988
37   Integrating user views in database design (context) - Navathe, Elmasri et al. - 1986
35   Schema equivalence in heterogeneous systems: Bridging theory.. (context) - Miller, Ioannidis et al. - 1994
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30   Theoretical aspects of schema merging - Buneman, Davidson et al. - 1992
26   Binary-relationship integration methodology (context) - Shoval, Zohn - 1991
25   Representing extended entity-relationship structures in rela.. (context) - Markowitz, Shoshani - 1992
18   A new way to compute the product and join of relations (context) - Kim - 1980
16   Modeling asynchrony in distributed databases (context) - Wiederhold, Qian - 1987
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8   View definition and generalisation for database integration .. (context) - Dayal, Hwang - 1984
8   Prototype implementation of the integrated genomic database (context) - Ritter, Kocab et al. - 1994
1   Integrity checking in federated databases (context) - Grefen, Widom - 1994
1   Abstract of participants (context) - Interconnection, Biology - 1995
1   Morphing sparsely populated data (context) - Davidson, Hara et al. - 1995



The graph only includes citing articles where the year of publication is known.


Documents on the same site (http://www.cis.upenn.edu/~db/biomed.html):   More
A Query Interface for Heterogenous Biological Data Sources - Kyle Hart (1994)   (Correct)
BioKleisli: A Digital Library for Biomedical Researchers - Davidson, Overton, Tannen.. (1996)   (Correct)
Facilitating Transformations in a Human Genome Project.. - Davidson, Kosky, Eckman (1994)   (Correct)

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