Donoho, D. L. and Johnstone, I. M. (1994). Ideal spatial adaption by wavelet shrinkage.  Home/Search   Document Not in Database   Summary   Related Articles   Check

....function, ffl outlier removal, ffl extrapolation of missing signal parts, ffl data compression, which refers to the representation of the measurement signal on various levels of resolution. Recent developments show that wavelets are very well suited for dealing with these tasks (e.g. [6, 7, 9, 24, 45]) We restrict the following brief presentation to interpolation, denoising and compression only. For the sake of brevity we do not attempt to give a survey on the rich literature on wavelet based signal processing. Instead we illuminate only the basic principles needed to gain a more thorough ....

....will modify the (unknown) statistics of the measurement signal. 5.2.2 Denoising Now y J i is transformed into the signal y J i where the over bar denotes the processed interpolated signal after denoising. To accomplish this task various methods are suggested by several authors (e.g. [10, 24, 25]) Without going into detail we only mention one common method. There, the expansion coefficients d y J i of the 19 interpolated signal y J i are replaced by modified coefficients d y J i according to the shrinkage algorithm d y J i : ae d y J i Gamma (sign d y J i ) ....

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D. Donoho and I. Johnstone. Ideal spatial adaption by wavelet shrinkage. Biometrika, 81:425--455, 1994.

....Figure 1. Slices of the activation mask showing the placement of cubes within the real data We chose to evaluate the performance of both linear (Matched and Butterworth) and non linear filters. In the latter case we compared three wavelet based algorithms Sureshrink [4] Visushrink [5] and Change Point Thresholding [6] and a temporal filter based on the SUSAN noise reduction filter [7] After each temporal filter had been applied, an unpaired t test was run on the data to give a z score image. This image was then binary thresholded at a particular significance level ....

D. L. Donoho & I. M. Johnstone. "Ideal spatial adaption by wavelet shrinkage." Biometrika 81, pp. 425--455, 1994.

.... 2 1 g Phi( Gamma 2 Gamma ) f1 ( 1 Gamma 2 ) 2 Gamma 2 1 g Phi( 2 Gamma ) 2 1 Gamma 2 Gamma ) Gamma 2 Gamma ) Gamma (2 1 Gamma 2 ) 2 Gamma ) 19) This formula generalizes results that were obtained by other authors in the conventional setting where 1 = 2 (Donoho and Johnstone 1994; Abramovich and Silverman 1998) 5.2. Regular grids of arbitrary length. In this section we consider the performance of the methods on data where the t i are regularly placed but the number of points is not necessarily a power of two. The basic idea is to use our algorithm to map the data to a ....

....to map the data to a grid of length 2 J so that standard DWT implementations can be used. We use our exact risk formula to examine the mean square error for rescaled versions of four test signals Doppler, Heavisine, Blocks and Bumps (see Figure 2) that were analyzed by Donoho (1993a) and Donoho and Johnstone (1994). Calculations were carried out for each n in f17; 2048g. For each n, the time points were given by t i = i 0:5) n for i = 1; n; and the size 2 J of the grid ( t j ) was chosen to be the smallest power of two not less than n. The noise level oe was chosen as 0:35 ....

Donoho, D. L. and Johnstone, I. M. (1994). Ideal spatial adaption by wavelet shrinkage. Biometrika, 81:425--455.

.... for any particular function and time sequence, the vectors f and Rf # are calculated, and their wavelet transforms substituted into (6) The function # can be evaluated from its definition by making use of properties of the normal distribution, generalizing results for # 1 = # 2 given by Donoho and Johnstone (1994) and Abramovich and Silverman (1998) to obtain ### ; # 1 ;# 2 ; 1# = # 2 1 #2# 1 , # 2 , ## #,# 2 , ## , #2# 1 , # 2 ## ## 2 , ## f1 ## # 2 , # 1 # 2 , # 2 1 g##,# 2 , ## f1 ## # 1 , # 2 # 2 , # 2 1 g### 2 , ##: COEFFICIENT DEPENDENT THRESHOLDING IN ....

....the t i are regularly placed but the number of points is not necessarily a power of two, using our algorithm to map the data to a grid of length 2 J and using standard DWT implementations. Our exact risk formula was applied to rescaled versions of the standard test signals of Donoho (1993) and Donoho and Johnstone (1994). For each n in f17; 2048g, calculations were performed for n time points equally spaced in #0; 1#, and the size 2 J of the grid # t j # was chosen to be the smallest power of two not less than n. The noise level # was chosen as 0:35 and the threshold chosen with VisuShrink, assuming the ....

Donoho, D. L. and Johnstone, I. M. (1994). Ideal spatial adaption by wavelet shrinkage. Biometrika, 81:425--455.

....of exchangeable or spatial random e#ects to account for unobserved individual or spatial heterogeneity. A simple modi#cation of #4# or #5# allows for estimation of unsmooth functions f# t g, such as the stylized functions Blocks, Bumps, Heavy Sine and Doppler constructed for wavelet shrinkage by Donoho and Johnstone #1994#. The basic idea is to replace the constant variance q 2 =var## t # in #4# or #5# by locally varying variances q 2 t , thereby replacing the global smoothing parameter # = # 2 =q 2 byalocal smoothing parameter # t = # 2 =q 2 t . To estimate the variance function fq 2 t g together ....

Donoho, D.L. and Johnstone, I.M. #1994#. Ideal spatial adaption by wavelet shrinkage. Biometrika81, 425-455.

.... Gamma h i Gamma2 v i ; v i N(0; q) and an inverse Gamma prior for q. Posterior sampling is carried out by a hybrid MCMC algorithm, combining Gibbs and Metropolis Hastings steps. The method works quite well with the Blocks , Bumps and Doppler simulated examples, constructed by Donoho and Johnstone (1994) for wavelet shrinkage. 2.3 Basis function approach Let S = fB i (x) i 2 Ig be a set of linearly independent univariate functions, which are called basis functions. This section outlines recent Bayesian methods for nonparametric estimation of f by modeling it as a linear combination f(x) X ....

DONOHO, D., JOHNSTONE, I. (1994): Ideal spatial adaption by wavelet shrinkage. Biometrika, 81, 425-455.

....The proposed estimator yields an adaptive economical description of the estimates in terms of basis functions. However it shares the stability of smoothing procedures. Our proposal is based on soft thresholding estimators, which have become popular in the context of wavelet regression, compare Donoho and Johnstone (1994), Nason and Silverman (1994) Donoho, Johnstone, Kerkyacharian and Picard (1995) and Bruce and Gao (1996) This work transfers the soft thresholding idea to generalized linear models and multiple predictor variables. In contrast to variable selection, soft thresholding provides a unified ....

....Subsection 3 Delta2, yield a parsimonious approximation. More generally, a wide variety of functions, e.g. those that are piecewise smooth having some discontinuities and those having inhomogeneous smoothness properties can be parsimoniously approximated by the set of wavelet basis functions, see Donoho and Johnstone (1994) and Donoho et al. 1995) for details. Periodicity of j(x) may easily be employed using orthogonal trigonometric polynomials as described in the example. Let Z be a n Theta n matrix with i th column created by evaluating 1 (x) k (x) at the i th sample point. In case of ....

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Donoho, D. L. and Johnstone, I. M. (1994). Ideal spatial adaption by wavelet shrinkage, Biometrika 81, 425--455.

....coefficients in (6) and (9) respectively. The discrete vaguelette transform of the observed y in the wavelet vaguelette decomposition, followed by appropriate rescaling, yields vaguelette coefficients b 0 jk N(b 0 jk ; oe 2 ) Straightforward calculations, given as (46) and (47) of Donoho Johnstone (1994) for the special case oe = 1, give the following formulae for the mean squared error of the individual vaguelette coefficients: E[fffi ( b 0 jk ) Gamma b 0 jk g 2 ] b 0 jk ) 2 Gamma f(b 0 jk ) 2 Gamma oe 2 Gamma 2 g[f Phif( Gamma b 0 jk ) oeg Phif( b ....

....shows that the tail sum 1 X j=J X k ( jk Gamma jk ) 2 = 1 X j=J X k 2 jk (20) is O(n Gamma2s ) if p 2 and O(n Gamma2s 0 ) if p 2. In either case, the definitions and conditions of Theorem 1 ensure that the sum is o(n Gammar ) as n 1. The bound given by Donoho Johnstone (1994) for the mean squared error of a single coefficient implies that, for j J , E( jk Gamma jk ) 2 f1 2(1 2ff) log ngfn Gamma(1 2ff) oe 2 j min( 2 jk ; oe 2 j )g: so that, since the sum (20) for j J is o(n Gammar ) Ek Gamma k 2 f1 2(1 2ff) log ngfn ....

DONOHO, D. L. & JOHNSTONE, I. M. (1994). Ideal spatial adaption by wavelet shrinkage.

....with dozens of false inflection points. This unpleasant truth is never mentioned by wavelet protagonists. Wavelet al..gorithms for function estimation offer two advantages: 1) speed, the algorithms are often O(N log(N) 2) asymptotic minimax optimality in a number of decision theoretic settings [2]. The speed arises from separability: each wavelet coefficient is estimated separately without regard to geometric fidelity. The asymptotic optimality theory assumes that the unknown function is an arbitrary member of a function space, which makes function fits with ten or twenty inflection points ....

....same asymptotic behavior as the Akaike information criterion. For fl 2 = 1, d B is the Bayesian Schwartz information criterion. For a nested family of models, fl 2 = 1 is appropriate while fl 2 = 2 corresponds to a nonnested family with 2 Gamma N K Delta candidate models at the kth level [2]. In very specialized settings in regression theory and time series, it has been shown that functions like d I are asymptotically efficient while those like d B are asymptotically consistent. In other words, using d I like criteria will asymptotically minimize the expected error at the cost ....

D. L. Donoho, I. M. Johnstone, "Ideal spatial adaption by wavelet shrinkage," Biometrika, 81 425456, 1995.

....Section 4.2) It is interesting to compare the priors (1:2) with the three point least favourable priors of the form: jk j 2 ffi( j ) j 2 ffi( Gamma j ) 1 Gamma j )ffi(0) 1.4) used for derivation minimax wavelet estimators. The expressions for j and j are given in Donoho Johnstone (1994) and Johnstone (1994) Clyde, Parmigiani Vidakovic (1998) use a similar formulation to (1:2) but with different forms for the hyperparameters j and 2 j . The prior model (1:2) is also an extreme case of that of Chipman, Kolaczyk McCulloch (1997) Their prior for each jk is the mixture ....

....is a shrink or kill rule. The resulting coefficients d jk are then used for selective reconstruction of an estimate by the inverse DWT: g = W T d The choice of is obviously crucial: small large threshold values will produce estimates that tend to overfit underfit the data. Donoho Johnstone (1994) proposed the universal threshold DJ = oe p 2 log n. Despite the triviality of such a threshold, they showed that the resulting wavelet estimator is asymptotically near minimax among all estimators within the whole range of Besov spaces. Wang (1996) and Johnstone Silverman (1997) studied ....

[Article contains additional citation context not shown here]

Donoho, D.L. & Johnstone, I.M. (1994). Ideal spatial adaption by wavelet shrinkage. Biometrika 81, 425-455.

....value (or values) and then applying a shrinkage function to the coefficients using these thresholds. Examples of threshold values are the universal and minimax thresholds and the most commonly used threshold functions are the hard and soft rules. All of these are discussed in more detail in Donoho and Johnstone (1994). 3 Bayesian Wavelet Analysis Bayesian wavelet analysis is particulary straightforward due to the linear nature of the wavelet model. We can draw on standard results from the Bayes linear model (Lindley and Smith, 1972) in our analysis. Under the assumption of Gaussian white noise we have Y = ....

....; y 0 y Gamma 2 y 0 y Gamma b fiV b fi) where n is the number of data points (Bernardo and Smith, 1994) 5 Simulations The three sampling methods and the four default priors were tested on two standard wavelet data sets. These are the bumps and heavisine functions investigated by Donoho and Johnstone (1994). We generated 1024 datapoints from each function and following the approach of Donoho and Johnstone (1994) Gaussian white noise was added to make the signal to noise ratio 7. Each sampling method and prior were tested for five runs with different random seeds. Each run consisted of a burn in ....

[Article contains additional citation context not shown here]

Donoho, D.L. and Johnstone, I.M. (1994) Ideal spatial adaption by wavelet shrinkage.

.... 2 Gamma ) f1 ( 1 Gamma 2 ) 2 Gamma 2 1 g Phi( 2 Gamma ) 2 1 Gamma 2 Gamma ) Gamma 2 Gamma ) Gamma (2 1 Gamma 2 ) 2 Gamma ) 19) This formula generalizes results that were obtained by other authors in the conventional setting where 1 = 2 (Donoho and Johnstone 1994; Abramovich and Silverman 1998) 5.2 Regular grids of arbitrary length In this section we consider the performance of the methods on data where the t i are regularly placed but the number of points is not necessarily a power of two. The basic idea is to use our algorithm to map the data to a ....

....to map the data to a grid of length 2 J so that standard DWT implementations can be used. We use our exact risk formula to examine the mean square error for rescaled versions of four test signals Doppler, Heavisine, Blocks and Bumps (see Figure 2) that were analyzed by Donoho (1993a) and Donoho and Johnstone (1994). Calculations were carried out for each n in f17; 2048g. For each n, the time points were given by t i = i 0:5) n for i = 1; n; and the size 2 J of the grid ( t j ) was chosen to be the smallest power of two not less than n. The noise level oe was chosen as 0:35 ....

Donoho, D. L. and Johnstone, I. M. (1994). Ideal spatial adaption by wavelet shrinkage. Biometrika, 81:425--455.

....4.2) It is interesting to compare the priors (1:2) with the three point least favourable priors of the form: jk j 2 ffi ( j ) j 2 ffi ( Gamma j ) 1 Gamma j )ffi(0) 1.4) used for derivation minimax wavelet estimators. The expressions for j and j are given in Donoho Johnstone (1994) and Johnstone (1994) Clyde, Parmigiani Vidakovic (1998) use a similar formulation to (1:2) but with different forms for the hyperparameters j and 2 j . The prior model (1:2) is also an extreme case of that of Chipman, Kolaczyk McCulloch (1997) Their prior for each jk is the mixture ....

....is a shrink or kill rule. The resulting coefficients d jk are then used for selective reconstruction of an estimate by the inverse DWT: g = W T d The choice of is obviously crucial: small large threshold values will produce estimates that tend to overfit underfit the data. Donoho Johnstone (1994) proposed the universal threshold DJ = oe p 2 log n. Despite the triviality of such a threshold, they showed that the resulting wavelet estimator is asymptotically near minimax among all estimators within the whole range of Besov spaces. Wang (1996) and Johnstone Silverman (1997) studied ....

[Article contains additional citation context not shown here]

Donoho, D.L. & Johnstone, I.M. (1994). Ideal spatial adaption by wavelet shrinkage. Biometrika 81, 425-455.

....Summary We propose a new method for estimation of a high number of coecients within the generalized linear model framework. The estimator leads to an adaptive selection of model terms without substantial variance in ation. Our proposal extends the soft thresholding strategy from Donoho and Johnstone (1994) to generalized linear models and multiple predictor variables. Furthermore, we develop an estimator for the covariance matrix of the estimated coecients, which can even be used for terms dropped from the model. Used in connection with basis functions, the proposed methodology provides an ....

....variance in ation and, in conjunction with the maximum likelihood principle, to selection bias. In this paper we suggest a compromise between these two classical remedies, the generalized soft threshold (GSoft) estimator. The naming is due to the soft threshold strategy, introduced by Donoho and Johnstone (1994) in the case of normally distributed errors and orthogonal covariate design. GSoft is closely related to the LASSO of Tibshirani (1996) but is further developed in several aspects. As the ridge estimator maximizes the loglikelihood in an elliptical region, GSoft can be regarded as a maximizer of ....

[Article contains additional citation context not shown here]

Donoho, D. L. and Johnstone, I. M. (1994). Ideal spatial adaption by wavelet shrinkage, Biometrika 81, 425-455.

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Donoho, D. L. and Johnstone, I. M. (1994). Ideal spatial adaption by wavelet shrinkage.

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Donoho, D. L. and I. M. Johnstone (1994). Ideal spatial adaption by wavelet shrinkage. Biometrika 81, 425--455.

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DONOHO, D. L. & JOHNSTONE, I. M. (1994). Ideal spatial adaption by wavelet shrinkage. Biometrika 81, 425--55.

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Donoho, D.L. and I.M. Johnstone (1994). Ideal spatial adaption by wavelet shrinkage. Biometrika 81, 425--455.

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D.L. Donoho and I.M. Johnstone, "Ideal spatial adaption by wavelet shrinkage," Biometrika, vol. 81, no. 3, pp. 425--455, 1994.

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Donoho D., Johnstone I.: Ideal Spatial Adaption by Wavelet Shrinkage, Biometrika 81, 425-455, 1994.

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Biometrica 81, 541-553. Donoho, D. L. and Johnstone, I. M. (1994). Ideal spatial adaption by wavelet shrinkage. Biometrika, 81, 425-455.

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Donoho, D.L. and I.M. Johnstone, Ideal spatial adaption by wavelet shrinkage, Biometrika, 81 (1994) 425-455.

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Donoho, D.L. & Johnstone, I.M. (1994). Ideal spatial adaption by wavelet shrinkage. Biometrika 81, 425--455.

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Donoho, D.L. & Johnstone, I.M. (1994). Ideal spatial adaption by wavelet shrinkage. Biometrika 81, 425-455.

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Biometrika 85, 391-402. Donoho, D. L. and Johnstone, I. M. (1994). Ideal spatial adaption by wavelet shrinkage. Biometrika 81, 425-55.

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