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E.Winfree. Algorithmic Self-Assembly of DNA. Ph.D Dissertation, submitted to Californial Institute of Technology, May 1998.

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Computation = Self-assembly + Conformational Change: Toward New.. - Yokomori (1999)   (Correct)

....example, have two sides differently coded. Thus, it seems that skillfully designed, multi sort coded components make it possible to achieve a variety of fairly complicated computations, which have already been demonstrated and even proved by the work on self assembly models by Winfree and others ([17, 18]) It should be noted that no concept (or knowledge) of elementary arithmetic is involved in the process of self assembly computation for factorization. In general, there seems to be trade off relations in computational power among the use of coded components and conformational change . From ....

....of YAC computation assembly units is expected to facilitate its implementation greatly. From a computation theoretic point of view, the basic principle of YAC is quite similar to those of DNA EC( 20] and Watson Crick Automata ( 7] on one hand, and that of Winfree s 2D self assembly models ([17, 18]) on the other, while YAC model seems simple enough to be implemented with the state of the art technology of molecular biology. Finally, resource complexity issues in CCC may be one of the most major problems to be analysed, and incremental assembly methods suggested in [21] may be expected to ....

E.Winfree. Algorithmic Self-Assembly of DNA. Ph.D Dissertation, submitted to Californial Institute of Technology, May 1998.


YAC: Yet Another Computation Model of Self-Assembly - Yokomori (1999)   (Correct)

....of equality checking of two working tapes of DNA strands, while we claim that YAC model is much simpler than others and it gains some advantages over them. On the other hand, there are already some results on self assembly DNA computing models. Among others Winfree s 2D self assembly models in [21, 22] (W models, for short) that may be regarded as a coded self assembly model in our sense, are most relevent to discuss. The advantages and distinguished features of YAC model may be summarized as follows: 1. YAC needs not to take care of controlling the state transition process that is essential ....

E.Winfree. Algorithmic Self-Assembly of DNA. Ph.D Dissertation, submitted to Californial Institute of Technology, May 1998.

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