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) Altschul,S.F. and Gish,W. (1996) Methods Enzymol., 266, 460-480

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A Discriminative Framework for Detecting Remote Protein.. - Jaakkola, Diekhans.. (1998)   (38 citations)  (Correct)

....that belong to the superfamily but not to the test family itself. The results for the latter method were slightly superior for the SVM Fisher method, and we report them here. 3.4 BLAST Methods Two BLAST methodologies were used for comparison, each using WU BLAST version 2. 0a16 [Gish, 1998, Althschul Gish, 1996] These are family pairwise search homology methods, as explored in [Grundy, 1998] In both methods, the PDB90 database was queried with each positive training sequence, and E values were recorded. One method, referred to as BLAST:SCOP only in the results section, used positive training examples ....

Althschul, S. & Gish, W. (1996). Methods Enzymol. 266, 460{ 480.


Gapped BLAST and PSI-BLAST: a new generation of.. - Altschul, Madden, .. (1997)   (259 citations)  Self-citation (Altschul)   (Correct)

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Altschul,S.F. and Gish,W. (1996) Methods Enzymol., 266, 460--480.


Protein Sequence Similarity Searches Using Patterns as.. - Zhang, Schaffer.. (1998)   (3 citations)  Self-citation (Altschul)   (Correct)

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Altschul,S.F. and Gish,W. (1996) Methods Enzymol., 266, 460--480.


Multi-motif PHI-BLAST: a new tool for Database - Searching And Sequence   (Correct)

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) Altschul,S.F. and Gish,W. (1996) Methods Enzymol., 266, 460-480


SCOP: a Structural Classification of Proteins database - Hubbard, Ailey, Brenner.. (1999)   (110 citations)  (Correct)

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Altschul,S.F. and Gish,W. (1996) Methods Enzymol., 266, 460--480.

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