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Simons, KT and Bonneau, R and Ruczinski, I and Baker, D: Ab Initio Protein Structure Prediction of Casp III Targets Using Rosetta. (1999) Proteins 1999; Suppl. 3:171-6

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Approximation of Protein Structure for Fast Similarity Measures - Fabian Schwarzer And   (3 citations)  (Correct)

....nearest neighbor search and automatic structural classification show a significant speed up. 1 Introduction Automatic protein structure comparison is an important problem in computational structural biology, e.g. in structural databases and classification [10, 24] structure prediction [6, 7, 19, 26, 30, 31], analysis of trajectories through conformational space generated by molecular dynamics and Monte Carlo simulations [22, 29, 36] graph based methods for evaluating ensemble properties [2, 3, 33] etc. As opposed to sequence matching, structural matching requires a similarity measure that is ....

K. T. Simons, R. Bonneau, I. Ruczinski, and D. Baker. Ab initio protein structure prediction of CASP III targets using ROSETTA. Proteins, 37(3):171--176, 1999.


Computational Biology and Language - Madhavi Ganapathiraju Narayanas (2005)   (Correct)

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Simons, KT and Bonneau, R and Ruczinski, I and Baker, D: Ab Initio Protein Structure Prediction of Casp III Targets Using Rosetta. (1999) Proteins 1999; Suppl. 3:171-6


Computational Biology and Language - Ganapathiraju, Balakrishnan, Reddy, .. (2004)   (Correct)

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Simons, KT and Bonneau, R and Ruczinski, I and Baker, D: Ab Initio Protein Structure Prediction of Casp Iii Targets Using Rosetta. (1999)


Protein Structure Prediction by Linear Programming - Xu (2003)   (Correct)

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K. Simons, R. Bonneau, I. Ruczinski, and D. Baker. Ab initio protein structure prediction of casp iii targets using rosetta. Proteins: Structure, Function and Genetics, S3:171-176, 1999.


Automated Assignment of SCOP and CATH Protein.. - Getz, Vendruscolo.. (2002)   (1 citation)  (Correct)

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Simons KT, Bonneau R, Ruczinski I, and Baker D. Ab initio protein structure prediction of CASP III targets using ROSETTA . Proteins 1999; 37:S3 171--176.


Effective Energy Functions for Protein Structure Prediction - Lazaridis, Karplus   (Correct)

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Simons KT, Bonneau R, Ruczinski I, Baker D: Ab initio protein structure prediction of CASP III targets using ROSETTA. Proteins 1999, (suppl 3):171-176.


DistributionsofBetaSheetsinProteinsWithApplicationto - Structureprediction..   (Correct)

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Simons KT, Bonneau R, Ruczinski I, Baker D. Ab initio protein structure prediction of casp iii targets using rosetta. Proteins 1999;37:171--176.


Flexibility of α-Helices: Results of a.. - Emberly.. (2003)   (Correct)

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Simons, K. T., Bonneau, R., Ruczinski, I. & Baker, D. (1999). Ab initio protein structure prediction of CASP III targets using ROSETTA. Proteins: Struct. Funct. Genet. 37, 171 -- 176.


Rosetta in CASP4: Progress in Ab Initio Protein.. - Bonneau, Tsai.. (2001)   (3 citations)  (Correct)

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Simons KT, Bonneau R, Ruczinski I, Baker D. Ab initio protein structure prediction of CASP III targets using ROSETTA [In Process Citation]. Proteins 1999;Suppl 3:171--176.


Distributions of Beta Sheets in Proteins with.. - Ruczinski.. (2002)   (Correct)

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Simons KT, Bonneau R, Ruczinski I, Baker D. Ab initio protein structure prediction of casp iii targets using rosetta. Proteins 1999;37:171--176.


Improving the Performance of Rosetta Using Multiple.. - Bonneau, Strauss, Baker (2001)   (Correct)

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Simons KT, Bonneau R, Ruczinski I, Baker D. Ab initio protein structure prediction of CASP III targets using ROSETTA. Proteins 1999;37:171--176.

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