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S.F. Altschul et al., Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Research 25 (1997), no. 17, 3389{ 3402.

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Bioinformatics Applications - Lavenier, Giraud (2005)   (Correct)

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S.F. Altschul et al., Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Research 25 (1997), no. 17, 3389{ 3402.


Biosequence Similarity Search on the Mercury System - Krishnamurthy, Buhler.. (2004)   (1 citation)  (Correct)

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S. F. Altschul et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research, 25:3389--402, 1997.


Spectral Clustering of Biological Sequence Data - William Pentney Department   (Correct)

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Altschul, S.; Madden, T.; Schaffer, A.; Zhang, J.; Anang, Z.; Miller, W.; and Lipman, D. 1997. Gapped blast and psi-blast: a new generation of protein database search programs. Nucl. Acids Res. 25:3389--3402.


Coordination Number Prediction Using Learning Classifier.. - Bacardit, Stout, al. (2006)   (Correct)

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S. F. Altschul, T. L. Madden, A. A. Scha#er, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Res, 25:3389--3402, 1997.


Hidden Markov Models for Detecting Remote Protein Homologies - Karplus, Barrett, Hughey (1999)   (29 citations)  (Correct)

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Altschul, S., Madden, T., Scha#er, A., Zhang, J., Zhang, Z., W., M., & D., L. #1997#. Gapped BLAST and PSIBLAST: A new generation of protein database search programs. NAR, 25, 3899#3402.


SignalProcdJF;I 83 (2003) 729 -- 743.. - Simultaneous..   (Correct)

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S.AltscTKd T. Madden, A.ScMKI;M J. Zhang, Z. Zhang, W. Miller, D. Lipman, GappedBLAST andPSI-BLAST: a new generation of protein databasesearc programs,Nucram Acc Res. 25 (1997) 3389--3402.


Plant Molecular Biology 50: 1--16, 2002. - New Pollen-Specific Receptor   (Correct)

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Altschul, S.F., Madden, T.L. Schffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Kipman, D.J. 1997. Gapped BLAST and PSIBlast: a new generation of protein database search programs. Nucl. Acids Res. 25: 3389--3402.


A Graphical Model for Predicting Protein Molecular Function - Barbara Engelhardt Bee   (Correct)

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Altschul, S. F. et al. (1997). Gapped BLAST and PSI- BLAST: a new generation of protein database search programs. Nucleic Acids Res, 25, 3389--3402.


Bioinformatics - Vol No Pages   (Correct)

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Altschul,S.F., Madden,T.L., Schaffer,A.A., Zhang,J., Zhang,Z.W.M. and Lipman,D.J. (1997) Gapped Blast and Psi-Blast: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389--3402.


Clustering of Translocation Breakpoints - Mark Segal And   (Correct)

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Altschul SF, Madden T, Scha#er A, Zhang J, Zhang Z, Miller W, Lipman D. #1997#. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research, 25:3389-3402.


Predicting Protein Folds with Structural Repeats Using a.. - Liu, Xing, Carbonell (2005)   (Correct)

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Altschul, S., Madden, T., Scha#er, A., Zhang, J., Zhang, Z., Miller, W., & Lipman, D. (1997). Gapped BLAST and PSI-blast: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389--402.


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Altschul, S., Madden, T., Scha#er, A., Zhang, A., Miller, W., & Lipman (1997). Gapped BLAST and PSIBLAST: a new generation of protein database search programs. Nucleid Acids Res., 25, 3389--3402.


Segmentation Conditional Random Fields (SCRFs): A.. - Liu, Carbonell..   (Correct)

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Altschul, S., Madden, T., Scha#er, A., Zhang, J., Zhang, Z., Miller, W., Lipman, D.: Gapped BLAST and PSI-blast: a new generation of protein database search programs. Nucleic Acids Res. 25 (1997) 3389--402


PSIST: Indexing Protein Structures using Suffix Trees - Feng Gao And   (Correct)

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S. Altschul, T. Madden, J. Zhang, Z. Zhang, W. Miller, and D. Lipman. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research, 25(17):3389--3402, 1997.


Learning Signi - Cant Alignments An   (Correct)

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Altschul, S., Madden, T., Scha er, A., Zhang, J., Zhang, Z., Miller, W., Lipman, D.: Gapped Blast and Psi-Blast: a new generation of protein database search programs. Nucleic Acids Research 25 (1997) 3389-3402


From HP Lattice Models to Real Proteins.. - Stout, Bacardit.. (2006)   (Correct)

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Altschul, S.F., Madden, T.L., Scher, A.A., Zhang, J., Zhang, Z., Miller, W., Lipman, D.J.: Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Res 25 (1997) 3389--3402


Coordination Number Prediction Using Learning Classifier.. - Bacardit, Stout, al. (2006)   (Correct)

No context found.

S. F. Altschul, T. L. Madden, A. A. Scha#er, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Res, 25:3389--3402, 1997.


A Unifying Framework for Seed Sensitivity and Its.. - Kucherov, Noe, Roytberg (2005)   (Correct)

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Altschul, S., Madden, T., Scha#er, A., Zhang, J., Zhang, Z., Miller, W., Lipman, D.: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25 (1997) 3389--3402


Rapid Homology Search with Two-Stage Extension and Daughter Seeds - Ma (2005)   (Correct)

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Altschul, S.F., Madden, T.L., Scha#er, A.A., Zhang, J., Zhang, Z., Miller, W., Lipman, D.J.: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25 (1997) 3389--3402


Improved hit criteria for DNA local alignment - Noe, Kucherov (2004)   (2 citations)  (Correct)

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ALTSCHUL, S., MADDEN, T., SCH AFFER, A., ZHANG, J., ZHANG, Z., MILLER, W., AND LIPMAN, D. Gapped BLAST and PSIBLAST: a new generation of protein database search programs. Nucleic Acids Research 25, 17 (1997), 3389--3402.


Explicit Control in a Batch-Aware Distributed File System - John Bent Douglas (2004)   (1 citation)  (Correct)

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S. F. Altschul, T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang, W. Miller, , and D. J. Lipman. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. In Nucleic Acids Research, pages 3389--3402, 1997.


Estimating Seed Sensitivity on Homogeneous Alignments - Kucherov, Noé, Ponty   (5 citations)  (Correct)

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S. Altschul, T. Madden, A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D. Lipman. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research, 25(17):3389--3402, 1997.


Rapid Homology Search with Neighbor Seeds - Csürös, Ma (2005)   (Correct)

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Altschul, S.F., Madden, T.L., Scha#er, A.A., Zhang, J., Zhang, Z., Miller, W., Lipman, D.J.: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25 (1997) 3389--3402


Pooled genomic indexing (PGI): - Mathematical Analysis And   (Correct)

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Altschul, S.F., Madden, T.L., Scha#er, A.A., Zhang, J., Zhang, Z., Miller, W., Lipman, D.J.: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25 (1997) 3389--3402 2. IHGSC: Initial sequencing and analysis of the human genome. Nature 609 (2001) 860--921


Pooled genomic indexing (PGI): - Mathematical Analysis And   (Correct)

No context found.

Altschul, S.F., Madden, T.L., Scha#er, A.A., Zhang, J., Zhang, Z., Miller, W., Lipman, D.J.: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25 (1997) 3389--3402 2. IHGSC: Initial sequencing and analysis of the human genome. Nature 609 (2001) 860--921

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