Burkhardt, S., Karkkainen, J.: Better filtering with gapped q-grams. Fundamenta Informaticae 56 (2003) 51--70 Preliminary version in Combinatorial Pattern Matching 2001. Home/Search Document Details and Download
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Better Filtering with Gapped q-Grams - Burkhardt, Kärkkäinen (2001) (11 citations) Self-citation (Burkhardt) (Correct)
....there are also practical applications for which the Hamming distance is a good, sometimes even a better distance measure. Examples include optical character recognition (OCR) and the detection of single nucleotide polymorphisms (SNPs) 21] This paper is an extended and updated version of [5]. Since then other results using carefully selected gapped q grams to improve approximate string matching have been published [14, 2] Both publications recognize the superiority of gapped over contiguous shapes and the importance of selecting good shapes. However, they focus on the case where the ....
Burkhardt, S., Karkkainen, J.: Better Filtering with Gapped q-Grams, Proceedings of the 12th Annual Symposium on Combinatorial Pattern Matching, number 2089.
A Unifying Framework for Seed Sensitivity and Its.. - Kucherov, Noe, Roytberg (2005) (Correct)
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Burkhardt, S., Karkkainen, J.: Better filtering with gapped q-grams. Fundamenta Informaticae 56 (2003) 51--70 Preliminary version in Combinatorial Pattern Matching 2001.
Rapid Homology Search with Two-Stage Extension and Daughter Seeds - Ma (2005) (Correct)
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Burkhardt, S., Karkkainen, J.: Better filtering with gapped q-grams. Fundamenta Informaticae 23 (2003) 1001-- 1008
Hardness of Optimal Spaced Seed Design - Nicolas, Rivals (2005) (1 citation) (Correct)
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S. Burkhardt and J. Karkkainen. Better filtering with gapped q-grams. Fundamenta Informaticae, 56(1--2):51--70, 2003.
Improved hit criteria for DNA local alignment - Noe, Kucherov (2004) (2 citations) (Correct)
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BURKHARDT, S., AND K ARKK AINEN, J. Better filtering with gapped q-grams. Fundamenta Informaticae 56, 1-2 (
Estimating Seed Sensitivity on Homogeneous Alignments - Kucherov, Noé, Ponty (5 citations) (Correct)
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S. Burkhardt and J. Karkkainen. Better filtering with gapped q-grams. Fundamenta Informaticae, 56(1-2):51--70, 2003.
Rapid Homology Search with Neighbor Seeds - Csürös, Ma (2005) (Correct)
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Burkhardt, S., Karkkainen, J.: Better filtering with gapped q-grams. Fundamenta Informaticae 23 (2003) 1001--1008
Multi-Seed Lossless Filtration (Extended Abstract) - Kucherov, Noe, Roytberg (2004) (Correct)
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Burkhardt, S., Karkkainen, J.: Better filtering with gapped q-grams. Fundamenta Informaticae 56 (2003) 51--70 Preliminary version in Combinatorial Pattern Matching 2001.
YASS: enhancing the sensitivity of DNA similarity search - Noe, Kucherov (2005) (Correct)
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Burkhardt,S. and Ka rkka inen,J. (2001) Better filtering with gapped q-grams. In Proceedings of the 12th Symposium on Combinatorial Pattern Matching (CPM'01), 1--4 July, Jerusalem, Israel, LNCS 2089, Springer, pp. 73--85.
Multi-Seed Lossless Filtration (Extended Abstract) - Kucherov, Noe, Roytberg (Correct)
No context found.
Burkhardt, S., Karkkainen, J.: Better filtering with gapped q-grams. Fundamenta Informaticae 56 (2003) 51--70 Preliminary version in Combinatorial Pattern Matching 2001.
On Spaced Seeds for Similarity Search - Keich, Li, Ma, Tromp (2002) (6 citations) (Correct)
No context found.
S. Burkhardt and J. K arkkainen, Better filtering with gapped q-grams. CPM 2001.
Improved hit criteria for DNA local alignment - Noe, Kucherov (2004) (2 citations) (Correct)
No context found.
BURKHARDT, S., AND K ARKK AINEN, J. Better filtering with gapped q-grams. Fundamenta Informaticae 56, 1-2 (
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