ALBERTS, B., BRAY, D., LEWIS, J., et al. (1995). Molecular Biology of the Cell, 3rd ed. (Garland, New York). Home/Search Document Not in Database Summary Related Articles Check |
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Computational Models of the Genetic Code Evolution Based on.. - Weberndorfer (Correct)
....of the genetic code (see table 1) was discovered in the 1960ies by Marshal Nirenberg [103, 104] and honored with the Nobel prize in 1968. The origin of this pivotal table remains an enigma, Nevertheless it is Figure 1. 1: Molecular details of the translation (figure copyrighted by Alberts et al. [1]) The three phases, initiation, elongation and termination are presented in the columns of the figure. expected to contain clues about the origin of life itself. 1. Position 2.Position 3.Position U C A G Phe Ser Tyr Cys C Phe Ser Tyr Cys A Leu Ser STOP STOP G Leu Ser STOP STOP U Leu Pro ....
B. Alberts, D. Bray, J. Lewis, M. Ra#, K. Roberts, and J. D. Watson. Molecular Biology of the cell . Garland Publishing, New York and London, 1984.
Algorithms for Molecular Biology Fall Semester, 2001 - Lecture October Lecturer (Correct)
....which looks rather like two interlocked bedsprings. Each helix is a chain of nucleotides held together by phospho diester bonds. The two helices are held together by hydrogen bonds. Each base pairs consists of one Based in part on a scribe by Eran Goldberg and Rotem Sorek, October, 2000, and on [5, 7, 2, 9, 4, 10, 6, 1, 3] Aviv Univ. Figure 1.1: Source: 8] On the left, DNA composition. On the right, DNA double helix structure. purine base (A or G) and one pyrimidine base (C or T) paired according the following rule: G C, A = T (each symbolizes a hydrogen bond) The DNA molecule is directional, due to ....
B. Alberts, D. Bray, J. Lewis, M. Ra#, K. Roberts, and J. Watson. Molecular Biology of the Cell. Garland Publishing, Inc, 1994.
Molecular Systems to Process Analog and Digital Data Associatively - Barnett (1986) (Correct)
....molecules attached to the neurotubule surface, or encoded in the neurofilaments, and matching and replacing performed on molecules that are transported along the neurotubule. The literature of modern cell biology deals largely with recognition, gating and replication phenomena (see, for example, [10]) Recognition and replication are of immense importance in processes that use nucleic acids and enzymes to control metabolism and heredity. Recognition of docking markers on subcellular vesicles by acceptor molecules on target membranes plays a key role in intra cellular transport. Recognition of ....
Alberts, B., Bray, D., Lewis, J., Raft, M., Roberts, K. and Watson, J. D. Molecular Biology of the Cell (Garland, New York, 1983).
An Agent-Based Architecture For Generating Interactive Stories - Osborn (2002) (Correct)
....18. 19. 20. 21. 22. 23. 24. 25. 26. 27. 28. 29. 30. 31. 32. 33. 34. 35. 36. 37. 38. 39. 40. 41. 42. 43. Cell Signaling Methods from [Cooper, 1997] 54 Cells Responding to Combinations of Extracellular Signals from [Alberts et el. 2002] . 55 Intracellular Signal Cascading from [Alberts et el. 2002] 56 Graphical Depiction of Connectors ....
..... 54 Cells Responding to Combinations of Extracellular Signals from [Alberts et el. 2002] 55 Intracellular Signal Cascading from [Alberts et el. 2002] . 56 Graphical Depiction of Connectors . 59 Connector Attached to a Host Agent . 60 Predator Prey Control Function ....
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Alberts, B., Johnson, A. Lewis, J., Raft, M., Roberts, K and Walter, P. Molecular Biology of the Cell. Garland Science, New York, NY, 2002.
New Approaches To Genome Sequence Analysis - Based On Digital (Correct)
....d i # i , 5) where d i is the length of each individual code word. In general, L is larger than the symbol length of the original sequence, but the total number of code words will be less. The human # globin intergenomic sequence (Accession HUMHBB) of length N = 73,308, which is studied in [1, 7] is addressed here. Accordingly, the Huffman encoding algorithm on this sequence reduces the number of symbols from N = 73,308 in the sequence domain to N = 20,841 in the encoded domain. Although the codebook generated for the Huffman encoder is not unique for each sequence, knowing the symbol ....
B. Alberts, D. Bray, J. Lewis, M. Raff, K. Roberts, and J. D. Watson, Molecular Biology of the Cell, Garland Publishing, Inc., New York, 1994, pp. 98--104.
Searching on the Secondary Structure of Protein Sequences - Hammel, Patel (2002) (1 citation) (Correct)
.... alignments can provide important insights into evolutionary relationships that may not be recognizable through primary structure comparisons [22] Therefore, examining the types, lengths, and start positions of its secondary structure folds can aid scientists in determining a protein s function [2]. 1.2 Scientific Motivation The discovery of new proteins or new behaviors of existing proteins necessitates complex analysis in order to Permission to copy without fee all or part of this material is granted provided that the copies are not made or distributed for direct commercial advantage, ....
....this information has two phases. The first phase involves searching known protein databases for proteins that match the unknown protein. The second phase involves analyzing the functions and classifications of the similar proteins in an attempt to infer commonalities with the new protein [2]. These phases may be intertwined as the analysis of matches may provide interesting results that could be further explored using more refined searches. The above simplification of the search process glosses over the actual definition of protein similarity. The reason for this is that no real ....
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B. Alberts, D. Bray, J. Lewis, M. Raff, K. Roberts, and J. D. Watson. Molecular Biology of the Cell, 3 rd ed. Garland Publishing, Inc., 1994.
Unknown - An Introduction To (Correct)
....the cell. A simplified example of these steps is shown in Figure 1.1. 1 Important biotechnological advances in recent years have allowed increasingly detailed studies of a variety of signalling pathways. These advances include production of recombinant DNA, the Polymerase Chain Reaction (PCR) [2], gel electrophoresis [21] microarrays [5] and the serial analysis of gene expression (SAGE) technique [20] Development of such techniques is ongoing, and large scale assays of peptides and protein DNA binding activity are becoming more feasible [1] Signal origin and recognition by the cell ....
.... is ongoing, and large scale assays of peptides and protein DNA binding activity are becoming more feasible [1] Signal origin and recognition by the cell A signaling molecule may be a protein, small peptide, amino acid, nucleotide, steroid, retinoid, fatty acid derivative or a dissolved gas [2]. Where does a signal come from There are di#erent types of signaling systems and the signal origin di#ers among them. For paracrine signaling, the signal originates from a nearby cell and, thus, the signal causes only localized e#ects. In endocrine signaling, hormones are secreted into the ....
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B. Alberts et al., Molecular biology of the cell, Garland Publishing, 1994.
An Educational Tool for Visualize DNA Structures - In Vivo Shigehiro (Correct)
....we developed an simulation tool for DNA s attitude. This tool helps to understanding that molecules are not stable crystal form in nature and molecules attitude with temperature changes. 2 System and Methods DNA molecules consist of two long chains held together by complementary base pairs [1](Fig. 1) Two chains repeat dissociate and associate while temperature changings because of these are connected with hydrogen bonds between them [3] A parts which having many A T pairs dissasociate easily. Because G C pair is more balanced than A T pair [2] This tool diplays DNA s status changes ....
Alberts, B., Bray, D. and Lewis, J., Ra#, M., Roberts, K., and Watson, J.D., MOLECULAR BIOLOGY OF THE CELL, THIRD EDITION, Garland Publishing, Inc. New York & London,
Collective Adaption: Explicit Cooperation in a Competitive.. - Haynes (1997) (Correct)
....1986] The non coding sequences might also act as a library for adaptation. During RNA splicing the non coding sequences are stripped, producing a smaller RNA molecule. As the gene can be spliced in a variety of ways, the non coding sequence for one mRNA could be a coding sequence for another [Alberts et al. 1989]. As a protein evolves to meet changes in the environment, it can also resort to the non coding segments instead of evolving entirely new genetic material. 3.1 Genetic Algorithms In the GA literature, the emphasis on non coding segments has focused on how these extra bits provide a buffer ....
....succinctly encapsulates the content of that chromosome. Each candidate clique is a building block from which better chromosomes can be constructed. This paring down of the chromosome is similar to the RNA splicing in that non coding segments are stripped out of the RNA transcript from DNA [Alberts et al. 1989]. If a GA chromosome has invalid bits, and an algorithm can translate those bits into valid bits, then they can be repaired and the resultant chromosome evaluated to determine the fitness of the original chromosome. Issues are whether or not to return the repaired chromosome into the population ....
Bruce Alberts, Dennis Bray, Julian Lewis, Martin Raff, Keith Roberts, and James D. Watson. Molecular Biology of the Cell. Garland Publishing, Inc., 1989.
Development and Applications of a Model for Cellular.. - Painter, Maini, Othmer (2000) (Correct)
....of molecule attracts some axons and repels others. Chemotaxis has also been widely studied in the clinical sciences because it is an important component of certain aspects of the immune response. Chemattractants released at the site of an infection attract white blood cells in the first response [1], and it has recently been found that adaptation plays an important role in guiding leukocytes through the attractant landscape set up by spatially separated sources [15] In tumor induced angiogenesis, cancerous cells secrete chemoattractants into the surrounding tissue, stimulating endothelial ....
.... k 2 v 1 y) 2 #v 1 (u 0 k 1 u 1 y) 2 = 0, 58) where y = cos jx. Rearranging this expression gives the following solutions for y, y# = v 0 k 2 ) # #u 1 #v 1 u 0 k 1 u 1 # v 1 # #u 1 #v 1 . 59) Of course the only real solutions lie in the range [ 1, 1], and it is easy to verify that either there is no solution or one solution that satisfies this criterion, depending on the parameters. When one solution does lie in this range we predict that complex patterns develop. These predictions are confirmed by a comparison of numerical and analytical ....
Alberts, B., Bray, D., Lewis, J., Raff, M., Roberts, K., Watson, J.D.: Molecular Biology of the Cell. Garland Publishing Inc., New York, London (1994)
Learning to Recognize Brain Specific Proteins Based on .. - Huss, Boström, Asker, .. (Correct)
....The resulting value was not divided by sequence length. The rationale was that the exact number of transmembrane regions may in fact be very meaningful for function and or classification; for example, Gprotein coupled receptors always have seven transmembrane regions, no matter their size [1]. 13) N linked glycosylation sites. N linked glycosylation is thought to participate in a wide variety of processes, like protein folding, sorting and targeting [17] The number of predicted Nlinked glycosylation sites was obtained from ScanPROSITE [29] However, N glycosylation occurs on the ....
Alberts, B., et al., "Molecular Biology of the Cell", Garland Publishing (1994) 735
OMICS A Journal of Integrative Biology - Volume Number Mary (Correct)
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ALBERTS, B., BRAY, D., LEWIS, J., et al. (1995). Molecular Biology of the Cell, 3rd ed. (Garland, New York).
Journal of Computational Neuroscience 7, 119--147 (1999) c - Evolution And Analysis (Correct)
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Alberts B, Bray D, Lewis J, Raff M, Roberts K, Watson JD (1989) Molecular Biology of the Cell (2nd ed.). Garland, New York.
Journal of Bioinformatics and Computational Biology - Vol No Imperial (Correct)
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B. Alberts, A. Johnson, J. Lewis, M. Ra#, K. Roberts and P. Walter, Molecular Biology of the Cell, 4th Edition. Taylor and Francis (2002).
Membrane Computing - current results and - Future Problems Francesco (Correct)
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Alberts, B., Johnson, A., Lewis, J., Ra#, M., Roberts, K., Walter, P. 2002. The Molecular Biology of The Cell. Fourth Edition. Garland Publ. Inc., London
Creating High-level Components with a Generative.. - Hornby, Pollack (2002) (6 citations) (Correct)
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B. Alberts, A. Johnson, J. Lewis, M. Ra , K. Roberts, and P. Walter. Molecular Biology of The Cell. Garland Publishing, New York, 4th edition, 2002. 27
A Stochastic Immersed Boundary Method for Biological.. - Atzberger, Kramer.. (2006) (Correct)
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B. Alberts, A. Johnson, J. Lewis, M. Raff, K. Roberts, and P. Walker, Molecular Biology of the Cell, Garland Publishing, 2002.
Morphological Plasticity: Environmentally Driven Morphogenesis - Bentley, Clack (2005) (Correct)
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Alberts, B.,Bray, D.,Lewis, J.,Ra#, M., Roberts, K., Watson, J. D.: Molecular Biology of The Cell. 3rd Edition. Garland Publishing (1994)
On the Computational Power of Photosynthesis - Murphy, Woods, Naughton (2005) (Correct)
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Alberts, Johnson, Lewis, Ra#, Roberts, and Walter. Molecular Biology of the Cell, 4th Edition. Garlend Science, 2002.
A Brownian Dynamics Model of Kinesin in Three Dimensions.. - Atzberger, Peskin (2005) (Correct)
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Alberts, B., Johnson, A., Lewis, J., Ra#, M., Roberts, K., Walker, P., 2002. Molecular Biology of the Cell. Garland Publishing.
The Artificial Cytoskeleton for Lifetime Adaptation of Morphology - Bentley, Clack (2004) (Correct)
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Alberts, B., Bray, D., Lewis, J., Raff, M., Roberts, K., and Watson, J. D. (1994). Molecular Biology of The Cell. Garland Publishing, 3rd edition.
Probabilistic Soft Interventions in Conditional Gaussian.. - Florian Markowetz Steen (Correct)
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B. Alberts, A. Johnson, J. Lewis, M. Ra#, K. Roberts, and P. Walter. Molecular Biology of the Cell. Garland Science, New York, 4 edition, 2002.
Mining Yeast Transcriptional Regulatory Modules from Factor.. - Pham, Satou, Ho (2004) (Correct)
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Alberts, B., Johnson, A., Lewis, J., Ra#, M., Roberts, K., and Walter, P., Molecular Biology of the Cell, Fourth Edition, Garland Science, Taylor&Francis Group, 2002.
Gene Sequence Data Sets Analysed using a Hierarchical.. - Adams, Davey, Pensuwon (2005) (Correct)
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B. Alberts, D. Bray, J. Lewis, M. Raff, K. Roberts and J.D. Watson, Molecular Biology of the Cell, Garland Publishing, New York, 1994.
Connecting Transistors and Proteins - Mattiussi, Floreano (Correct)
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Alberts, B, et al. 2002. Molecular Biology of the Cell (4th edition). New York : Garland Science.
Discovering Haplotypes in Linkage Disequilibrium - Mapping With An (Correct)
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Bruce Alberts, Alexander Johnson, Julian Lewis, Martin Ra , Keith Roberts, and Peter Walter. Molecular Biology of the Cell. Garland Pub, 4 edition, March 2002.
Rules Extraction in Linkage Disequilibrium Mapping with an.. - Jourdan, al. (Correct)
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Alberts, B., Johnson, A., Lewis, J., Ra , M., Roberts, K. & Walter, P. (2002) Molecular Biology of the Cell. 4 edition,, Garland Pub.
Membrane Computing - current results and future problems - Bernardini, Gheorghe.. (Correct)
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Alberts, B., Johnson, A., Lewis, J., Ra#, M., Roberts, K., Walter, P. 2002. The Molecular Biology of The Cell. Fourth Edition. Garland Publ. Inc., London
From Boolean to Probabilistic Boolean Networks as.. - Shmulevich.. (2002) (Correct)
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A. Alberts, D. Bray, J. Lewis, M. Raff, K. Roberts, and J. D. Watson, Molecular Biology of the Cell. New York: Garland, 1983.
Molecular Computing Machines - Yaakov Benenson Ehud (Correct)
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Alberts, B.; Johnson, A.; Lewis, J.; Raff, M.; Roberts, K.; Walter, P. Molecular Biology of the Cell, 4th Ed.; Garland: New York, 2002.
A Gene Network Model for Developing Cell Lineages - Geard, Wiles (Correct)
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Alberts, B., Bray, D., Lewis, J., Ra#, M., Roberts, K., & Watson, J. D. (1994). Molecular Biology of the Cell, 3rd ed. New York, NY: Garland.
DNA-mediated artificial nanobiostructures: state of the art and.. - Bashir (2001) (Correct)
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B. Alberts, D. Bray, J. Lewis, M. Raff, K. Roberts, and J. D. Watson, Molecular Biology of the Cell (Garland Publishing, New York) 3rd edn.
Computing with Cells and Atoms: After Five Years - Calude, Paun (2004) (Correct)
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B. Alberts, A. Johnson, J. Lewis, M. Ra#, K Roberts, P. Walter, Molecular Biology of the Cell, 4th ed. Garland Science, New York, 2002.
Modelling Gene Regulatory Networks: Systems Biology to Complex.. - Geard (2004) (Correct)
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B. Alberts, D. Bray, J. Lewis, M. Ra#, K. Roberts, and J. D. Watson. Molecular Biology of the Cell. Garland Publishing Inc., New York, NY, 3rd edition, 1994.
Mapping of Artificial Nucleosome Positioning.. - Tantoolvesm.. (2003) (Correct)
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Alberts, B., Johnson, A., Lewis, J., Ra#, M., Roberts, K., and Walter, P., Molecular Biology of the Cell, 4th Edition, Garland Science, 2002.
From Boolean to Probabilistic Boolean Networks as.. - Shmulevich.. (2002) (Correct)
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A. Alberts, D. Bray, J. Lewis, M. Raff, K. Roberts, and J. D. Watson, Molecular Biology of the Cell. New York: Garland, 1983.
LOGOS: A Modular Bayesian Model for de novo Motif Detection - Xing, Wu, al. (2004) (Correct)
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B. Alberts, A. Johnson, J. Lewis, M. Ra#, K. Roberts and P. Walter, Molecular Biology of the Cell, 4th Edition. Taylor and Francis (2002).
The Extension of ML with Hypothetical Views for Discovery.. - Sumii, Bannai (2003) (Correct)
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Bruce Alberts, Alexander Johnson, Julian Lewis, Martin Ra , Keith Roberts, and Peter Walter. Molecular biology of the cell. Garland Science, 4th edition, 2002.
The Adaptive Multilevel Finite Element Solution of the .. - Baker, Sept, Holst.. (2000) (Correct)
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B. Alberts, D. Bray, J. Lewis, M. Ra#, K. Roberts, and J. D. Watson. Molecular biology of the cell. Garland Publishing, New York, 1994.
Systems Biology - Dynamic Pathway Modelling - Wolkenhauer (2004) (Correct)
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B. Alberts et al. Molecular Biology of the Cell. Garland Science, 2002.
A Gene Regulatory Network for Cell Differentiation in.. - Geard, Wiles (2003) (1 citation) (Correct)
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B. Alberts, D. Bray, J. Lewis, M. Ra#, K. Roberts, and J. D. Watson. Molecular Biology of the Cell. Garland Publishing Inc., New York, NY, 3rd edition, 1994.
Unknown - (Correct)
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B. Alberts, A. Johnson, J. Lewis, M. Ra#, K. Roberts, and P. Walter. Molecular Biology of the Cell. Garland Publishing, Inc., fourth edition, 2002.
The Adaptive Multilevel Finite Element Dolution of the .. - Baker, Sept, Holst.. (2001) (Correct)
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B. Alberts, D. Bray, J. Lewis, M. Raff, K. Roberts, and J. D. Watson, Molecular Biology of the Cell, Garland Publishing, New York, 1994.
Bio-Steps Beyond Turing - Calude, Paun (2004) (Correct)
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B. Alberts, A. Johnson, J. Lewis, M. Ra#, K. Roberts, P. Walter. Molecular Biology of the Cell, 4th ed., Garland Science, New York, 2002.
On Cellular Automaton Approaches to Modeling Biological.. - Alber, Kiskowski.. (2002) (1 citation) (Correct)
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B. Alberts, M. Raff, J. Watson, K. Roberts, D. Bray, and J. Lewis, Molecular biology of the cell, 3rd edition, Garland Publishing, NY, 1994.
Robust Development as a Consequence of Generated Positional.. - Furusawa, Kaneko (Correct)
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Alberts B., Johnson A., Lewis J., Ra# M., Roberts K., & Walter P. (2002) The Molecular Biology of the Cell (Garland, N.Y.)
On Unsupervised Learning of Mixtures of Markov Sources - Seldin (Correct)
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Bruce Alberts, Dennis Bray, Julian Lewis, Martin Ra , Keith Roberts, and James D. Watson. Molecular Biology of the Cell. Garland Publishing, 3 edition, 1994.
Cluster Analysis of Gene Expression Data - Domany (2003) (Correct)
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B. Alberts, D. Bray, J. Lewis, M. Raff, K. Roberts, and J. D. Watson, Molecular Biology of the Cell, 3rd Ed. (Garland Publishing, New York, 1994).
Encyclopedia of Molecular Biology Thomas E. Creighton - Hongyun Wa Ng (Correct)
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Alberts, B., et al., Molecular Biology of the Cell. 3d ed. 1994, New York: Garland.
A Sense of Life - Mishra, Raoul-SamDaruwala, Zhou.. (Correct)
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B. Alberts, D. Bray, J. Lewis, M. Raff, K. Roberts, and J.D. Watson. Molecular Biology of the Cell , 3rd Edition, Garland, New York, 1995.
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