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Pearl, J. (2000). Causality -- models, reasoning, and inference. Cambridge, UK: Cambridge University Press.

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Evaluating the Effect of Perturbations in Reconstructing.. - Markowetz, Spang (2003)   (Correct)

.... Learning network structure The methods to build Bayesian networks from observational data can be divided into two classes: methods that use a scoring function to evaluate how well the network matches the data [1, 2] and methods that perform tests for conditional independence on the observations [5, 6]. The biological interpretation of the graphs produced by these methods is hindered by the fact that the representation of a joint distribution in a bayesian network is not unique. Many di#erent networks with ambiguous edges can represent the same joint distribution. Equivalent networks have the ....

Pearl, J. 2000. Causality: Models, Reasoning and Inference, Cambridge: Cambridge University Press.


Reconstructing Gene Regulation Networks From Passive.. - Markowetz, Spang (2003)   (Correct)

....gene regulation pathways but are statistically equivalent: Even with in nitely many data we can not decide between them. In general, arrows in bayesian networks can not be interpreted as causal relations. To further resolve the structure we need information about the e ect of interventions [5,7]. Perturbation data is provided by knock out or RNAi experiments. 3 Bayesian structure learning Search for DAGs with high bayesian score [2] Score(dag) P (dag j data) P (data j dag) P (dag) Using interventional data only a single DAG achieves the maximal score. Without interventions we ....

Pearl, J. 2000. Causality: Models, Reasoning and Inference, Cambridge: Cambridge University Press.


Reconstructing Gene Regulation Networks From Passive.. - Markowetz, Spang (2003)   (Correct)

....now a standard procedure. The methods to build Bayesian networks from observational data can be divided into two classes: methods that use a scoring function to evaluate how well the network matches the data [1, 2] and methods that perform tests for conditional independence on the observations [4, 5]. The biological interpretation of the graphs produced by these methods is hindered by the fact that the representation of a joint distribution in a bayesian network is not unique. Many di#erent networks with ambiguous edges can represent the same joint distribution. They indicate totally ....

Pearl, J. 2000. Causality: Models, Reasoning and Inference, Cambridge: Cambridge University Press.


A Calculus for Causal Relevance - Bonet (2001)   (Correct)

....by logical formulas and new relevance sentences can be derived from old ones through rules of inference. Such deductive system requires an interpretation; that is, a function that maps models to the sets of formulas they satisfy . The models we focus on are Pearl s functional causal models [6]. Once an interpretation is established, a natural question to ask is whether the system is sound (i.e. if every proven statement is true) and whether the system is complete (i.e. if every true statement is provable) In this paper we answer both questions in armative for some classes of ....

....(sub)model [x]T , that results from the intervention of setting the value of X to x, as [x]T = U ; fF 0 Y : Y 2 Xg) where F 0 Y = F Y for Y 62 X and F 0 Y = x# Y for Y 2 X . This intervention is denoted by the operator do(X = x) that maps causal models into causal models by T ; x]T (see [6]) A causal model de nes a system of equations once the exogenous variable had been set. In general, the system may have zero, one or multiple solutions. We will only consider causal models T such that for each subset X X and value x for X , the submodel [x]T has a unique solution for all u 2 U ....

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J. Pearl (2000). Causality: Models, Reasoning, and Inference. Cambridge University Press.


A Knowledge Home - Personal knowledge structuring in a computer.. - Toffoli (2001)   (Correct)

....do not possess must be approached, for our purposes, as an empirical matter. For example, it appears that, in contrast with superb language talents and visual spatial processing, our mind is poorly equipped (or perhaps just too impatient) to handle probability questions and complex inference chains[43, 29, 41, 5]. As a consequence, inference tasks in the management of the knowledge home will have to be supported by a di#erent strategy than, say, syntactical expansion. 3.2 What shall the knowledge home know Conversely, what basic innate capabilities shall be built into the knowledge home Earlier we ....

Pearl, Judea, Causality: Models, Reasoning, and Inference, Cambridge U. Press 2000.


Knowledge and Data Fusion in Probabilistic Networks - Laskey, Mahoney (2003)   (1 citation)  (Correct)

.... a hidden variable that carries most of their common variation (cf. Pearl 1988) It is important to note that in the presence of hidden variables or other patterns of missing data, it may be impossible to learn some parameters with any degree of accuracy no matter how large the sample size (e.g. Pearl, 2000). This phenomenon, in which different structures or values of a parameter give rise to exactly the same data distribution, is called non identifiability of the model (e.g. Thiel, 1974) The above example of systematically missing data is a case of non identifiability of the parameters of the ....

Pearl, J. (2000) Causality: Models, Inference and Reasoning. Cambridge: Cambridge University Press.


On Specifying Graphical Models for Causation, and the.. - Freedman (2001)   (Correct)

....needs empirical demonstration, which is easier said than done. What brings you to Chicago Econometrics. There is a lot of that going around. Overheard by Arnold Zellner Nonlinear models: Figure 1 revisited Graphical models can be set up with nonlinear versions of equation (1) as in Pearl (1995, 2000). The specification would be something like Y i,x = f(x,# i ) where f is some fairly general (unknown) function. The same questions about interventions and counterfactual hypotheticals would then have to be considered. Instead of rehashing such isues, I will indicate how to formulate the ....

....rather than specific numerical values. There will be some interesting new questions about identifiability. And the plausibility of causal interpretations can be assessed separately, as will be shown later. I will organize most of the discussion around two examples used by Pearl (1995) also see Pearl (2000, pp.66 68 and 83 85) But first, consider Figure 1. In the nonlinear case, the exogenous variables have to be assumed independent and identically distributed in order to make sense out of the mathematics; otherwise, there are substantial extra complications, or we have to impose additional ....

[Article contains additional citation context not shown here]

Pearl, J. (2000). Causality: Models, Reasoning, and Inference. Cambridge University Press.


Temporal Aggregation and Causality in Multiple Time Series.. - Breitung, Swanson (2001)   (Correct)

....that instantaneous causality x ) y (or by reasons of symmetry y ) x) occurs if E(y t jJ t ) 6= E(y t jJ t ) 2) 2 where J t = fI t1 ; z t g and J t = fI t1 ; z t ; x t g. This denition can be seen as a dynamic version of the causality concept used by Dawis (1979) and Pearl (2000), among others. For example, if t is white noise, we nd that there is no instantaneous causality between x t and y t if E(y t jz t ; x t ) E(y t jz t ) This condition is satised if x t and y t are conditionally independent given a sucient set of variables z t (see Dawis (1979) ....

.... E(y t jz t ) This condition is satised if x t and y t are conditionally independent given a sucient set of variables z t (see Dawis (1979) Furthermore, conditional independence implies a causal relationship that can be represented by using directed graphs (see Swanson and Granger (1997) and Pearl (2000) for more details) As already noted by Granger (1969) an important problem with the definitions is the choice the sampling interval. For example, variables which are Granger causal according to (1) and based on daily data, may not be Granger causal based on monthly data, and vice versa. In the ....

Pearl, J. (2000), Causality: Models, Reasoning, and Inference, Cambridge University Press.


Logical Argumentation, Abduction and Bayesian Decision Theory: A.. - Poole (2000)   (Correct)

....choices that have associated probability distributions. The logic program specifies what follows from the choices made. It is a way to lift belief networks into a first order language. In particular a belief network can be seen as a deterministic system with noise inputs (Pearl, 1999; Pearl, 2000). The deterministic system is modelled as a logic program. This can be seen as writing the conditional probability tables in rule form (which also naturally expresses context specific independence) The noise inputs are given in terms of independent choices. It is a sound way to have ....

Pearl, J. (2000). Causality: Models, Reasoning and Inference, Cambridge University Press.


A Bayesian Method for Causal Modeling and Discovery Under Selection - Cooper (2000)   (1 citation)  (Correct)

....and indeed, most databases are observational. Researchers have developed methods for causal modeling and discovery from observational data that are an unbiased sample from cases generated by a causal process of interest (Cooper and Herskovits 1992; Spirtes, et al. 1993; Heckerman, et al. 1995; Pearl 2000). Not infrequently, however, observational data consists of a biased sample of the cases generated by the causal process of interest. The samples appear in a dataset due to some selection criteria or effect. Such a sample 1 is said to be subject to selection bias. As one example, a robot can ....

Pearl, J. (2000) Causality: Models, Reasoning, and Inference (Cambridge University Press, Cambridge, UK).


Fluent Learning: Elucidating the Structure of Episodes - Cohen (2001)   (1 citation)  (Correct)

....coincidences of events are rare, so the episodic structure of a time series can be discovered by counting these coincidences. Thus, it accords with psychological literature on neonatal abilities to detect coincidences [9] and it has a strong statistical connection to causal induction algorithms [6]; though we do not claim that the algorithm discovers causal patterns. Our principal claim is that the algorithm discovers patterns (a syntactic notion) that correspond with episodes (a semantic notion) without knowledge of the latter. In discovering patterns the shape of episodes it ....

Pearl, J. 2000.Causality: Models, Reasoning and Inference. Cambridge University Press.


Useful Counterfactuals - Costello, McCarthy (1999)   (1 citation)  (Correct)

....he had put his weight on his downhill ski, he would not have fallen ) Counterfactuals are useful for other purposes in AI. Ginsberg [Ginsberg, 1986] suggests that they are useful for planning. They also are closely related to the notion of causality, as discussed in [Pearl, 1988] Ge ner, 1992] [Pearl, 2000]. 3 Detailed Examples Cartesian counterfactuals involve a counterfactual sentence, a theory, a frame, and a world point in the frame. The sentence is interpreted by the theory, relative to the frame. We move through the frame, from the current world, to a new point in the frame. 3.1 Rectangular ....

Pearl, J. (2000). Causality: models, reasoning, and inference. Cambridge University Press.


Causal Inference from Graphical Models - Lauritzen (1999)   (4 citations)  (Correct)

....statistical literature, concerned with the exploitation of this language to clarify and extend causal concepts. Among these we This is Research Report R 99 2021, Department of Mathematical Sciences, Aalborg University. 1 mention in particular books by Spirtes et al. 1993) Shafer (1996) and Pearl (2000) as well as the collection of papers in Glymour and Cooper (1999) Very briefly, but fundamentally, the important distinction to be made is the distinction between two types of conditional probability. We refer to these as conditioning by intervention and conditioning by observation and suggest ....

....and social sciences (Goldberger 1972) see for example Pearl (1998) and Spirtes et al. 1998) for further discussion. They were used as the main justification and motivation for studying causal Markov models in Kiiveri et al. 1984) and Kiiveri and Speed (1982) as well as in Pearl (1995a) and Pearl (2000). 36 Most commonly, structural equation models have been assumed linear although there are important exceptions (Goldfeld and Quandt 1972) Here we consider a general structural equation system associated with a directed acyclic graph D. More precisely we consider a system of equations X v ....

Pearl, J. (2000). Causality: Models, Reasoning, and Inference. Cambridge University Press, Cambridge, UK.


Applications of Bayesian Networks in Reliability Analysis - Langseth, Portinale (2006)   (Correct)

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Pearl, J. (2000). Causality -- models, reasoning, and inference. Cambridge, UK: Cambridge University Press.


Bayesian Networks in Reliability: Some Recent Developments - Langseth (2004)   (Correct)

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Pearl, J. (2000). Causality -- Models, Reasoning, and Inference. Cambridge, UK: Cambridge University Press.


Identification in Chain Multi-Agent Causal Models - Maes, Meganck, Manderick (2005)   (Correct)

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Pearl, J. 2000. Causality: Models, Reasoning and Inference. MIT Press.


Identification in Chain Multi-Agent Causal Models - Maes, Meganck, Manderick (2005)   (Correct)

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Pearl, J. 2000. Causality: Models, Reasoning and Inference. MIT Press.


Parameter Estimation in Large Causal - Independence Models Rasa   (Correct)

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Pearl, J. (2000). Causality: Models, Reasoning, and Inference, Cambridge University Press.


A Quantitative Model of Counterfactual Reasoning - Yarlett, Ramscar (2001)   (Correct)

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Pearl J. (2000). Causality: Models, Reasoning, and Inference, Cambridge University Press, Cambridge.


Inferring Subnetworks from Perturbed Expression Profiles - Pe'er, Regev, Elidan.. (2001)   (1 citation)  (Correct)

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J. Pearl. Causality: Models, Reasoning, and Inference. Cambridge Univ. Press, 2000.

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