John A. Board, Jr., Christopher W. Humphres, Christophe G. Lambert, William T. Rankin, Abdulnour Y. Toukmaji  Home/Search
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Abstract: Many realistic biomolecular simulations require use of periodic boundary conditions to create a surface-free environment for the molecule of interest and associated solvent molecules to interact. Electrostatic interactions are the principal computational cost of such simulations. We have implemented two codes: a parallel variant of an Ewald summation method which computes the effect of infinite periodic boundary conditions, and a parallel variant of a multipole algorithm which explicitly... (Update)
Context of citations to this paper: More
.... of a large class of hierarchical algorithms that include FFT algorithms [12, 16, 15] and multipole or multipole like algorithms[3] used in various application problems. The state of the art for implementing Strassen s algorithm and multipole algorithms is that end...
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BibTeX entry: (Update)
J. A. Board, Jr., C. W. Humphres, C. G. Lambert, W. T. Rankin, and A. Y. Toukmaji. Ewald and multipole methods for periodic n-body problems. In Proceedings, Eighth SIAM Conference on Parallel Processing for Scientific Computing, page CDROM. SIAM Press, 1997. http://citeseer.ist.psu.edu/board97ewald.html More
@misc{ board97ewald,
author = "J. Board and J. Humphres and C. Lambert and W. Rankin and A. Toukmaji",
title = "Ewald and multipole methods for periodic n-body problems",
text = "J. A. Board, Jr., C. W. Humphres, C. G. Lambert, W. T. Rankin, and A. Y.
Toukmaji. Ewald and multipole methods for periodic n-body problems. In Proceedings,
Eighth SIAM Conference on Parallel Processing for Scientific Computing,
page CDROM. SIAM Press, 1997.",
year = "1997",
url = "citeseer.ist.psu.edu/board97ewald.html" }
Citations (may not include all citations):156 Computer Simulation Using Particles (context) - Hockney, Eastwood - 1981
13 A Portable Distributed Implementation of the Parallel Multip.. (context) - Rankin, Board - 1995
13 Scalable variants of Multipole-Accelerated Algorithms for Mo.. - Board - 1995
8 A Multipole-Based Algorithm for Efficient Calculation of For.. - Lambert, Darden et al. - 1996
5 Portable and Versatile Treecode (context) - Warren, Salmon et al. - 1995
5 York and L (context) - Darden - 1993
3 Distributed Particle-Mesh Ewald: A Parallel Ewald Summation .. - Toukmaji, Paul et al. - 1996
1 Ewald Sum Techniques in Perspective: A Survey (context) - Toukmaji, Board - 1996
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