Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schffer, Jinghui Zhang, Zheng Zhang, Webb Miller, et al.  Home/Search
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Abstract: The BLAST programs are widely used tools for searching protein and DNA databases for sequence similarities. For protein comparisons, a variety of definitional, algorithmic and statistical refinements described here permits the execution time of the BLAST programs to be decreased substantially while enhancing their sensitivity to weak similarities. A new criterion for triggering the extension of word hits, combined with a new heuristic for generating gapped alignments, yields a gapped BLAST... (Update)
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BibTeX entry: (Update)
Altschul, S.; Madden, T.; Schaffer, A.; Zhang, J.; Zhang, Z.; Miller, W.; and Lipman, D. 1997. Gapped blast and psi-blast: a new generation of protein database search programs. http://citeseer.ist.psu.edu/altschul97gapped.html More
@article{ altschul97gapped,
author = "S. F. Altschul and T. L. Madden and A. A. Schaffer and J. Zhang and Z. Zhang and W. Miller and D. J. Lipman",
title = "Gapped {BLAST} and {PSI--{BLAST}}: a new generation of protein database search programs",
journal = "Nucleic Acids Res.",
volume = "25",
pages = "3389--3402",
year = "1997",
url = "citeseer.ist.psu.edu/altschul97gapped.html" }
Citations (may not include all citations):69 Nucleic Acids Res (context) - Bairoch, Apweiler - 1997
64 Nucleic Acids Res (context) - Benson, Boguski et al. - 1997
41 and Lipman (context) - Altschul, Gish et al. - 1990
41 and Lipman (context) - Altschul, Carroll - 1989
37 Time Warps (context) - Sankoff, Kruskal - 1983
19 and Lipman (context) - Pearson - 1988
15 and Haussler (context) - Brown, Hughey et al. - 1993
12 and Henikoff (context) - Henikoff - 1994
12 and Henikoff (context) - Henikoff - 1992
12 and Waterman (context) - Smith - 1981
12 and Henikoff (context) - Henikoff - 1996
11 and Durbin (context) - Sonnhammer - 1994
11 and Sander (context) - Holm - 1997
9 and Schneider (context) - Sander - 1991
9 and Wunsch (context) - Needleman - 1970
8 and Chothia (context) - Gerstein, Sonnhammer - 1994
8 and Eisenberg (context) - Gribskov, McLachlan - 1987
6 and Gibson (context) - Thompson, Higgins - 1994
6 and Koonin (context) - Tatusov, Altschul
6 DNA Res (context) - Kaneko, Sato et al. - 1996
6 and Ehrenfeucht (context) - Schneider, Stormo et al. - 1986
5 and Eggert (context) - Waterman - 1987
5 and Miller (context) - Myers - 1988
5 Methods Enzymol (context) - Altschul, Gish - 1996
4 and Erickson (context) - Altschul - 1986
4 and von Hippel (context) - Berg - 1987
4 and Wootton (context) - Lawrence, Altschul et al. - 1993
4 Nucleic Acids Res (context) - Staden - 1984
4 and Erickson (context) - Altschul - 1986
4 and Miller (context) - Chao, Pearson - 1992
4 and Orcutt (context) - Dayhoff, Schwartz - 1978
4 and Lyall (context) - Collins, Coulson - 1988
3 and Hartzell (context) - Stormo - 1989
3 Protein Sci (context) - Yi, Lander - 1994
3 and Smith (context) - Fitch - 1983
3 Nucleic Acids Res (context) - Smith, Waterman et al. - 1985
3 and Dayhoff (context) - Schwartz - 1978
3 and Lipman (context) - Wilbur - 1983
3 and Federhen (context) - Wootton - 1993
3 Nature Genet (context) - Altschul, Boguski et al. - 1994
2 and Durbin (context) - Eddy, Mitchison - 1995
2 and Nomura (context) - Nagase, Seki et al. - 1996
2 and Gribskov (context) - Bailey - 1996
2 and Argos (context) - Sibbald - 1990
2 and Vingron (context) - Waterman - 1994
2 and Zeitouni (context) - Dembo, Karlin
2 GenBank accession no (context) - Tabata - 1996
2 Nature Genet (context) - Koonin, Altschul et al. - 1996
2 and Egan (context) - Dodd - 1987
2 and Robinson (context) - Robinson - 1991
1 and Huebner (context) - Ohta, Inoue et al. - 1996
1 and Segal (context) - Heidenreich, Mallee - 1993
1 and Scawen (context) - Richardson, Dilworth - 1975
1 and Mitchison (context) - Krogh - 1995
1 and Emtage (context) - Jou, Verhoeyen et al. - 1980
1 EMBL accession no (context) - Hernandez, Weber et al. - 1996
1 and Hopkins (context) - Allende, Amsterdam et al. - 1996
1 and Moxon (context) - Maskell, Szabo et al. - 1992
1 and Hofmann (context) - Bucher, Karplus et al. - 1996
1 and Blanquet (context) - Plateau, Fromant et al. - 1989
1 and Haussler (context) - Sjlander, Karplus et al. - 1996
1 and Koonin (context) - Bork, Hofmann et al. - 1997
1 and Mornon (context) - Callebaut - 1997
1 Shattuck-Eidens (context) - Miki, Swensen - 1994
1 Nature Genet (context) - Wu, Wang et al. - 1996
1 DDBJ accession no (context) - Tanaka, Tanaka - 1996
1 GenBank accession no (context) - Johnson, de la et al. - 1997
1 and Padmanabhan (context) - Tokunaga, Yaegashi et al. - 1986
1 GenBank accession no (context) - Johnston, Andrews et al. - 1994
1 GenBank accession no (context) - Fulton, Waterston - 1995
1 EMBL accession no (context) - Barrell, Rajandream et al. - 1996
1 Hoppe-Seyler's Z (context) - Matsuda, Maita et al. - 1980
1 Protein Sci (context) - Henikoff, Henikoff - 1997
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