See this document in CiteSeerX!

Demonstrating the Scalability of a Molecular Dynamics Application on a Petaflop Computer (2001)  (Make Corrections)  (9 citations)
George S. Almasi, Calin Cascaval, Jose G. Castanos, Monty Denneau Wilm Donath, Maria Eleftheriou, Mark Giampapa, Howard Ho, Derek Lieber, Jose E. Moreira, et al.
International Conference on Supercomputing



  Home/Search   Context   Related

 
View or download:
ibm.com/people/c/cascaval/ics01.ps
Cached:  PS.gz  PS  PDF   Image  Update  Help

From:  ibm.com/people/c/c...publications (more)
(Enter author homepages)

Rate this article: (best)
  Comment on this article  
(Enter summary)

Abstract: The IBM Blue Gene project has endeavored to develop a cellular architecture computer with millions of concurrent threads of execution. One of the major challenges of this project is demonstrating that applications can successfully exploit this massive amount of parallelism. Starting from the sequential version of a well known molecular dynamics code, we developed a new application that exploits the multiple levels of parallelism in the Blue Gene cellular architecture. We perform both analytical ... (Update)

Cited by:   More
FAST: A Functionally Accurate Simulation Toolset for the.. - Cuvillo, Zhu, Hu, Gao (2005)   (Correct)
Landing OpenMP on Cyclops-64: An Efficient Mapping of OpenMP .. - Cuvillo, Zhu, Gao (2006)   (Correct)
Dissecting Cyclops: A Detailed Analysis of a.. - Almasi, Cascaval, .. (2002)   (Correct)

Active bibliography (related documents):   More   All
0.5:   Using Metacomputing Tools to Facilitate Largescale.. - Waugh, Williams, Wei, .. (2001)   (Correct)
0.3:   A Test Set for Molecular Dynamics Algorithms - Barth, Leimkuhler, Reich (2002)   (Correct)
0.2:   Multiscale Research in Molecular Mechanics - Brandt   (Correct)

Similar documents based on text:   More   All
0.3:   Evaluation of a Multithreaded Architecture for Cellular.. - Calin Cascaval Jose (2002)   (Correct)
0.3:   Calculating Stack Distances Efficiently - Almasi, Cascaval, Padua (2001)   (Correct)
0.2:   Evaluation of OpenMP for the Cyclops Multithreaded.. - Almasi, Ayguade.. (2003)   (Correct)

Related documents from co-citation:   More   All
4:   FlexRAM: Toward an advanced intelligent memory system - Kang, Huang et al. - 1999
4:   Mapping Irregular Applications to DIVA (context) - Hall, Koller et al. - 1999
2:   Programming in Vienna Fortran - Chapman, Mehrotra et al. - 1992

BibTeX entry:   (Update)

Almasi, G.S., C. Cascaval et al., "Demonstrating the scalability of a molecular dynamics application on a Petaflop computer," Proc. Int'l Conf. Supercomputing, 2001, pp. 393-406. http://citeseer.ist.psu.edu/almasi01demonstrating.html   More

@inproceedings{ almasi01demonstrating,
    author = "George S. Almasi and Calin Cascaval and Jose G. Castanos and Monty Denneau and Wilm E. Donath and Maria Eleftheriou and Mark Giampapa and Howard Ho and Derek Lieber and Jose E. Moreira and Dennis M. Newns and Marc Snir and Henry S. Warren Jr.",
    title = "Demonstrating the scalability of a molecular dynamics application on a Petaflop computer",
    booktitle = "International Conference on Supercomputing",
    pages = "393-406",
    year = "2001",
    url = "citeseer.ist.psu.edu/almasi01demonstrating.html" }
Citations (may not include all citations):
306   Computer Simulation of Liquids (context) - Allen, Tildesley - 1987
57   Fast parallel algorithms for short-range molecular dynamics - Plimpton - 1995
56   A case for intelligent RAM: IRAM - Patterson, Anderson et al. - 1997
37   FlexRAM: Toward an advanced intelligent memory system - Kang, Huang et al. - 1999
21   Charmm: A program for macromolecular energy minimization (context) - Brooks, Bruccoleri et al. - 1983
19   thermodynamical properties of Lennard-Jones molecules (context) - Verlet, on - 1967
16   Reversible multiple time scale molecular dynamics (context) - Tuckerman, Berne et al. - 1990
10   Die Berechnung optischer und elektrostatischer Gitterpotenti.. (context) - Ewald - 1921
6   Toward a cost-effective DSM organization that exploits proce.. - Torrellas, Yang et al. - 2000
4   Molecular dynamics in systems with multiple time scales (context) - Tuckerman, Berne - 1992
2   Parallel molecular dynamics: Implications for massively para.. - Taylor, Stevens et al. - 1997
1   Novel binding mode of hydroxamate inhibitors to human carbon.. (context) - Scolnick, Clements et al. - 1997
http://www.research.ibm.com/bluegene
http://www.cmm.upenn.edu/moore/code/code.html
http://htmt.jpl.nasa.gov



The graph only includes citing articles where the year of publication is known.


Documents on the same site (http://www.research.ibm.com/people/c/cascaval/publications.html):   More
Evaluation of a Multithreaded Architecture for Cellular.. - Calin Cascaval Jose (2002)   (Correct)
Dissecting Cyclops: A Detailed Analysis of a.. - Almasi, Cascaval, .. (2002)   (Correct)
An Overview of the Blue Gene/L System Software.. - Almasi, Bellofatto.. (2003)   (Correct)

Online articles have much greater impact   More about CiteSeer.IST   Add search form to your site   Submit documents   Feedback  

CiteSeer.IST - Copyright Penn State and NEC