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A Nearly Linear-Time General Algorithm for Bi-Allele Haplotype Phasing Will Casey  (Make Corrections)  
and Bud Mishra Courant Institute, New York University, 251 Mercer Street, New ...



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Abstract: The determination of feature maps, such as STSs , SNPs or RFLP maps, for each chromosome copy or haplotype in an individual has important potential applications to genetics, clinical biology and association studies. We consider the problem of reconstructing two haplotypes of a diploid individual from genotype data generated by mapping experiments, and present an algorithm to recover haplotypes. The problem of optimizing existing methods of SNP phasing with a population of diploid... (Update)

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BibTeX entry:   (Update)

@misc{ mishra-nearly,
  author = "And Bud Mishra",
  title = "A Nearly Linear--Time General Algorithm for Bi--Allele Haplotype Phasing
    Will Casey",
  url = "citeseer.ist.psu.edu/765907.html" }
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14   Inference of Haplotypes from PCR-Amplified Samples of Diploi.. (context) - Clark - 1990
14   Maximum--Likelihood Estimation of Molecular Haplotype Freque.. (context) - Excoffier, Slatkin - 1995
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5   Genomics via Optical Mapping II: Ordered Restriction Maps - Anantharaman, Mishra et al. - 1997
5   Haplotyping as Perfect Phylogeny, A Direct Approach - Bafna, Gusfield et al. - 2002
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3   Genetic Data Analysis II (context) - Weir - 1996
1   Partitioning Single-Molecule Maps into Multiple Populations:.. - Parida, Mishra - 2000
1   In situ localized amplification and contact replication of m.. (context) - Mitra, Church - 1999
1   Placing Probes on the Genome with Pairwise Distance Data (context) - Casey, Mishra et al. - 2001

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