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Abstract: this paper is the Boolean formalism as a building block for modeling complex, large-scale, and dynamical networks of genetic interactions. We discuss the goals of modeling genetic networks as well as the data requirements. The Boolean formalism is justified from several points of view. We then introduce Boolean networks and discuss their relationships to nonlinear digital filters. The role of Boolean networks in understanding cell differentiation and cellular functional states is discussed. The ... (Update)
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BibTeX entry: (Update)
I. Shmulevich, E. R. Dougherty, and W. Zhang, "From Boolean to probabilistic Boolean networks as models of genetic regulatory networks," Proceedings of the IEEE, vol. 90, no. 11, pp. 1778--1792, 2002. http://citeseer.ist.psu.edu/article/shmulevich02from.html More
@misc{ shmulevich02from,
author = "I. Shmulevich and E. Dougherty and W. Zhang",
title = "From Boolean to probabilistic Boolean networks as models of genetic regulatory
networks",
text = "I. Shmulevich, E. R. Dougherty, and W. Zhang, From Boolean to probabilistic
Boolean networks as models of genetic regulatory networks, Proceedings of
the IEEE, vol. 90, no. 11, pp. 1778--1792, 2002.",
year = "2002",
url = "citeseer.ist.psu.edu/article/shmulevich02from.html" }
Citations (may not include all citations):2138 Genetic Algorithms in Search (context) - Goldberg - 1989
1543 Probabilistic Reasoning in Intelligent Systems: Networks of .. (context) - Pearl - 1997
1291 The Nature of Statistical Learning Theory (context) - Vapnik - 2000
575 Image Analysis and Mathematical Morphology (context) - Serra - 1982
537 A theory of the learnable (context) - Valiant - 1984
519 System Identification: Theory for the User (context) - Ljung - 1999
165 Molecular classification of cancer: Class discovery and clas.. (context) - Golub, Slonim et al. - 1999
144 Computational limitations on learning from examples (context) - Pitt, Valiant - 1988
119 Comprehensive identification of cell cycle-regulated genes o.. - Spellman, Sherlock et al. - 1998
116 Molecular Biology of the Cell (context) - Alberts, Bray et al. - 1983
97 Computational Learning Theory (context) - Anthony, Biggs - 1992
84 Quantitative monitoring of gene expression patterns with a c.. (context) - Schena, Shalon et al. - 1995
76 Toward a general theory of adaptive walks on rugged landscap.. (context) - Kauffman, Levin - 1987
71 Statistical Signal Processing (context) - Scharf - 1991
54 Ratio-based decisions and the quantitative analysis of cDNA .. - Chen, Dougherty et al. - 1997
49 A methodology for solving Markov models of parallel systems (context) - Plateau, Fourneau - 1991
46 Evolving cellular automata to perform computations: Mechanis.. (context) - Mitchell, Crutchfield et al. - 1994
34 An Introduction to Morphological Image Processing (context) - Dougherty - 1992
31 A theoretical analysis of the properties of median filters (context) - Gallagher, Wise - 1981
31 Tissue classification with gene expression profiles (context) - Ben-Dor, Bruhn et al. - 2000
29 High density synthetic oligonucleotide arrays (context) - Lipshutz, Fodor et al. - 1999
29 Stack filters (context) - Wendt, Coyle et al. - 1986
26 Metabolic stability and epigenesis in randomly constructed g.. (context) - Kauffman - 1969
24 Classification and diagnostic prediction of cancers using ge.. (context) - Khan, Wei et al. - 2001
24 Genomic regulation modeled as a network with basins of attra.. - Wuensche - 1998
24 Cause--effect relationships and partially defined Boolean fu.. (context) - Crama, Hammer et al. - 1988
22 Error-free and best-fit extensions of partially defined Bool.. - Boros, Ibaraki et al. - 1998
20 Identification of genetic networks from a small number of ge.. - Akutsu, Miyano et al. - 1999
19 Modeling and simulation of genetic regulatory systems: A lit.. (context) - de Jong - 2002
19 Probabilistic Boolean networks: A rule-based uncertainty mod.. - Shmulevich, Dougherty et al. - 2002
19 Multivariate measurement of gene expression relationships - Kim, Dougherty et al. - 2000
16 General nonlinear framework for the analysis of gene interac.. - Kim, Dougherty et al. - 2000
15 Identification of gene regulatory networks by strategic gene.. - Akutsu, Kuhara et al. - 1998
15 Gene perturbation and intervention in probabilistic Boolean .. - Shmulevich, Dougherty et al. - 2002
14 REVEAL, a general reverse engineering algorithm for inferenc.. - Liang, Fuhrman et al. - 1998
14 Stack filters and the mean absolute error criterion (context) - Coyle, Lin - 1988
14 Computational Modeling of Genetic and Biochemical Networks (context) - Bower, Bolouri - 2001
14 Median filtering by threshold decomposition (context) - Fitch, Coyle et al. - 1984
12 Nonlinear Filters for Image Processing (context) - Dougherty, Astola - 1999
11 Discovery of regulatory interactions through perturbation: I.. (context) - Ideker, Thorsson et al. - 2000
11 Von Neumann's self-reproducing automata (context) - Burks - 1970
10 the period-two-property of the majority operator in infinite.. (context) - Moran - 1995
8 Coefficient of determination in nonlinear signal processing - Dougherty, Kim et al. - 2000
8 Control of stationary behavior in probabilistic Boolean netw.. - Shmulevich, Dougherty et al.
8 Optimal stack filtering and the estimation and structural ap.. (context) - Coyle, Lin et al. - 2037
8 Computational studies of gene regulatory networks: In numero.. (context) - Hasty, McMillen et al. - 2001
8 The logical analysis of continuous, nonlinear biochemical co.. (context) - Glass, Kauffman - 1973
7 Markov chain sensitivity measured by mean first passage time.. - Cho, Meyer - 2000
7 Robustness as an evolutionary principle - Bornholdt, Sneppen - 2000
7 Genetic control of flower morphogenesis in Arabidopsis thali.. (context) - Mendoza, Thieffry et al. - 1999
7 the use of the MDL principle in gene expression prediction - Tabus, Astola - 2001
7 Circuits Syst (context) - existence, the et al. - 1992
7 Gene expression profiling, genetic networks, and cellular st.. (context) - Huang - 1999
6 Dynamical behavior of biological regulatory networks---I. Bi.. (context) - Thomas, Thieffry et al. - 1995
6 Mathematical modeling of gene networks (context) - Smolen, Baxter et al. - 2000
6 Development of a system for the inference of large scale gen.. - Maki, Tominaga et al. - 2001
6 Normalized maximum likelihood models for Boolean regression .. (context) - Tabus, Rissanen et al. - 2002
6 Programming the Drosophila embryo (context) - Bodnar - 1997
6 Binary analysis and optimizationbased normalization of gene .. - Shmulevich, Zhang - 2002
5 Genomic cis-regulatory logic: Experimental and computational.. (context) - Yuh, Bolouri et al. - 1902
5 Modeling the normal and neoplastic cell cycle with `realisti.. (context) - Szallasi, Liang - 1998
5 Optimal weighted median filtering under structural constrain.. (context) - Yang, Yin et al. - 1995
5 Algorithms for choosing differential gene expression experim.. - Karp, Stoughton et al. - 1999
4 Convergence behavior and root signal sets of stack filters (context) - Gabbouj, P-T et al. - 1992
4 It's a noisy business! Genetic regulation at the nanomolar s.. (context) - McAdams, Arkin - 1999
4 Modeling the complexity of gene networks: Understanding mult.. (context) - Somogyi, Sniegoski - 1996
4 Gene expression profiling: Monitoring transcription and tran.. (context) - Celis, Kruhffer et al. - 2000
4 Finding genetic network from experiments by weighted network.. - Noda, Shinohara et al. - 1998
4 The classification and associative memory capability of stac.. (context) - Yu, Coyle - 1992
4 Root properties and convergence rates of median filters (context) - Fitch, Coyle et al. - 1985
3 Emergence of homeostasis and noise imprinting in an evolutio.. (context) - Stern - 1999
3 the relationship between genomic regulatory element organiza.. (context) - Wolf, Eeckman - 1998
3 Complexity of the consistency problem for certain post class.. - Shmulevich, Gabbouj et al. - 2001
3 Genomics, gene expression and DNA arrays (context) - Lockhart, Winzeler - 2000
3 Convergence behavior and N-roots of stack filters (context) - Yu, Coyle - 1990
3 Sources of variation in microarray experiments (context) - Kerr, Leiter et al. - 2002
3 Inference of genetic regulatory networks under the best-fit .. - Shmulevich, Saarinen et al. - 2002
3 Optimal morphological restoration: The morphological filter .. (context) - Loce, Dougherty - 1992
3 Precision of morphological-representation estimators for tra.. (context) - Dougherty, Loce - 1994
2 Hidden Order: How Adaptation Builds Complexity (context) - Holl - 1995
2 Root properties of morphological filters (context) - Wang, Gabbouj et al. - 1993
2 Optimal and adaptive design of logical granulometric filters (context) - Dougherty, Chen - 2001
2 Differential p53 phosphorylation and activation of apoptosis.. (context) - Kobayashi, Ruan et al. - 1998
2 Telomere loss: Mitotic clock or genetic time bomb (context) - Harley - 1991
2 New York: Academic (context) - Codd, Automata - 1968
2 Evolving two-dimensional cellular automata to perform densit.. (context) - Morales, Crutchfield et al. - 2001
2 NewYork: Oxford Univ (context) - Kauffman, in et al. - 1995
2 Parallel computation and visualization tools for codetermina.. (context) - Suh, Dougherty et al. - 2002
2 Genomics, complexity and drug discovery: Insights from Boole.. (context) - Huang - 2001
2 Microarrays under the microscope (context) - Wildsmith, Elcock - 2001
2 Shape-dependent control of cell growth, differentiation, and.. (context) - Huang, Ingber - 2000
2 How to reconstruct a large genetic network from n gene pertu.. (context) - Wagner - 2001
2 Transcriptional regulation of the p21(WAF1/CIP1) gene (context) - Gartel, Tyner - 1999
2 Regulation of CAK kinase activity by p53 (context) - Schneider, Montenarh et al. - 1998
2 Evaluation, strength, and relevance of variables of Boolean .. (context) - Hammer, Kogan et al. - 2000
2 The large scale structure and dynamics of genetic control ci.. (context) - Kauffman - 1974
2 New York: Oxford Univ (context) - of, Self-Organization et al. - 1993
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