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Abstract: This paper describes the design and evaluation of PROTOMOL, a high performance object-oriented software framework for molecular dynamics (MD). (Update)
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BibTeX entry: (Update)
@misc{ algorithmic-protomol,
author = "Framework For Algorithmic",
title = "PROTOMOL: A Molecular Dynamics Research",
url = "citeseer.ist.psu.edu/713211.html" }
Citations (may not include all citations):254 Elements of Reusable Object-Oriented Software (context) - Gamma, Helm et al. - 1995
25 NAMD2: Greater scalability for parallel molecular dynamics - Kale, Skeel et al. - 1999
21 design: generic programming and design patterns applied (context) - Alexandrescu, Modern - 2001
10 A smooth particle mesh Ewald method (context) - Essmann, Perera et al. - 1995
10 Die Berechnung optischer und elektrostatischer Gitterpotenti.. (context) - Ewald - 1921
9 Multiple grid methods for classical molecular dynamics (context) - Skeel, Tezcan et al. - 2002
9 Langevin stabilization of molecular dynamics (context) - Izaguirre, Catarello et al. - 2098
9 Parallelization and Force Computation In Molecular Dynamics (context) - Matthey - 2002
9 PROTOMOL: an object-oriented framework for prototyping novel.. - Matthey, Cickovski et al. - 2002
8 ProtoMol: A molecular dynamics framework with incremental pa.. - Matthey, Izaguirre - 2001
7 Multi-model simulations of chicken limb morphogenesis - Chaturvedi, Izaguirre et al. - 2003
5 MDSimAid: An automatic recommender for optimization of fast .. - Ko - 2002
4 Multiscale Computational Methods in Chemistry and Physics (context) - Brandt, Bernholc et al. - 2001
4 Linearly scalable hybrid monte carlo method for conformation.. - Hampton, Izaguirre - 2003
4 An impulse integrator for Langevin dynamics - Skeel, Izaguirre - 2002
4 Structure and Mandelung energy of spherical Coulomb crystals (context) - Hasse, Avilov - 1991
3 Accuracy and efficiency of the particle mesh Ewald method (context) - Petersen - 1995
2 Targeted mollified impulse -- a multiscale integrator for mo.. (context) - Ma, Izaguirre - 2003
2 Bicrystal structures in rf traps of species with identical c.. (context) - Matthey, Drewsen - 2003
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