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  Sequence database compression for peptide identification [1 citations — 0 self]

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by Nathan Edwards
http://nje.homeip.net/~Nathan/documents/wabi2004.pdf
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Abstract:

from tandem mass spectra

Citations

7711 Computers and Intractability: A Guide to the Theory of NP-Completeness – Garey, Johnson - 1979
574 Algorithms on Strings, Trees, and Sequences – Gusfield - 1997
78 An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database – Eng, McCormack, et al. - 1994
71 On a combinatorial problem – Bruijn, Erdos - 1948
68 Probability-based protein identification by searching sequence databases using mass spectrometry data – Perkins, Pappin, et al. - 1999
52 L-tuple DNA sequencing: computer analysis – Pevzner - 1989
38 A novel method for nucleic acid sequence determination – Bains, Smith - 1988
22 SCOPE: a probabilistic model for scoring tandem mass spectra against a peptide database – Bafna, Edwards - 2001
17 DNA sequencing by hybridization with oligonucleotides – Lysov, Floretiev, et al. - 1988
11 Graphic programming using odd or even points – Kwan - 1962
6 VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL – Kersey, Hermjakob, et al. - 2000
3 Generating peptide candidates from amino-acid sequence databases for protein identification via mass spectrometry – Edwards, Lippert - 2002
2 E.: Algorithmic complexity of protein identification: Combinatorics of weighted strings. Discrete Applied Mathematics 137 – Cieliebak, Erlebach, et al. - 2004
2 R.: Sequencing of megabase plus DNA by hybridization. Genomics 4 – Drmanac, Labat, et al. - 1989
1 to UniProt — UniProt [the Universal Protein Resource] [online, cited June 24, 2004]. Available from: http://www.uniprot.org – Welcome