Zheng Zhang, Alejandro A. Schaffer, Webb Miller, Thomas L. Madden, David J. Lipman, Eugene V. Koonin, Stephen F. Altschul  Home/Search
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Abstract: Protein families often are characterized by conserved sequence patterns or motifs. A researcher frequently wishes to evaluate the significance of a specific pattern within a protein, or to exploit knowledge of known motifs to aid the recognition of greatly diverged but homologous family members. To assist in these efforts, the pattern-hit initiated BLAST (PHI-BLAST) program described here takes as input both a protein sequence and a pattern of interest that it contains. PHI-BLAST searches a... (Update)
Context of citations to this paper: More
.... Whereas there are a number of public domain tools, such as BLAST, for querying genetic data and the primary structure of proteins [1, 3, 4, 27, 28], to the best of our knowledge there are no tools available for querying on the secondary structure of proteins. This work...
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BibTeX entry: (Update)
Z. Zhang, A. A. Schaffer, W. Miller, T. L. Madden, D. J. Lipman, E. V. Koonin, and S. F. Altschul. Protein Sequence Similarity Searches Using Patterns As Seeds. Nucleic Acids Research, 26(17): 3986-3990, 1998. http://citeseer.ist.psu.edu/article/zhang98protein.html More
@misc{ zhang98protein,
author = "Z. Zhang and A. Schaffer and W. Miller and T. Madden and D. Lipman and
E. Koonin and S. Altschul",
title = "Protein Sequence Similarity Searches Using Patterns As Seeds",
text = "Z. Zhang, A. A. Schaffer, W. Miller, T. L. Madden, D. J. Lipman, E. V.
Koonin, and S. F. Altschul. Protein Sequence Similarity Searches Using Patterns
As Seeds. Nucleic Acids Research, 26(17): 3986-3990, 1998.",
year = "1998",
url = "citeseer.ist.psu.edu/article/zhang98protein.html" }
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Documents on the same site (http://www-users.cs.umn.edu/~karypis/Classes/CS8980/index.html):
GenBank - Benson, Boguski, Lipman, Ostell.. (1999) (Correct)
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