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Abstract: ]
Gonzalo Navarro
Dept. of Computer Science
University of Chile
Blanco Encalada 2120
Santiago, Chile
gnavarro@dcc.uchile.cl
Mathieu Raffinot
Equipe g enome, cellule et informatique
Universit e de Versailles
45 avenue des Etats-Unis
78035 Versailles Cedex
raffinot@genome.uvsq.fr
ABSTRACT
The problem of fast searching of a pattern that contains
Classes of characters and Bounded size Gaps (CBG) in a
text has a wide range of applications, among which a very
important one is protein ... (Update)
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0.3: Regular Expression Searching on Compressed Text - Navarro
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0.2: Fast Multipattern Search Algorithms for Intrusion Detection - Kuri, Navarro (2000)
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4: Regular expression search algorithm (context) - Thompson - 1968
4: A new approach to text searching (context) - Baeza-Yates, Gonnet - 1992
3: A four Russians algorithm for regular expression pattern matching (context) - Myers - 1992
BibTeX entry: (Update)
G. Navarro and M. Ranot. Fast and simple character classes and bounded gaps pattern matching, with application to protein searching. In Proceedings of the 5th Annual International Conference on Computational Molecular Biology (RECOMB), pages 231-240. ACM Press, 2001. http://citeseer.ist.psu.edu/article/navarro01fast.html More
@inproceedings{ navarro01fast,
author = "Gonzalo Navarro and Mathieu Raffinot",
title = "Fast and simple character classes and bounded gaps pattern matching, with application to protein searching",
booktitle = "{RECOMB}",
pages = "231-240",
year = "2001",
url = "citeseer.ist.psu.edu/article/navarro01fast.html" }
Citations (may not include all citations):
204
Oxford University Press (context) - Crochemore, Rytter - 1994
196
Fast text searching allowing errors (context) - Wu, Manber - 1992
81
A new approach to text searching (context) - Baeza-Yates, Gonnet - 1992
64
From regular expression to deterministic automata (context) - Berry, Sethi - 1986
59
Speeding up two string-matching algorithms (context) - Czumaj, Crochemore et al. - 1994
57
Regular expression search algorithm (context) - Thompson - 1968
55
A fast bit-vector algorithm for approximate string matching ..
- Myers - 1999
33
A sub-quadratic algorithm for approximate limited expression..
- Wu, Manber et al. - 1996
27
Taxonomies and toolkits of regular language algorithms (context) - Watson - 1995
24
Faster approximate string matching
- Baeza-Yates, Navarro - 1999
22
A four-russian algorithm for regular expression pattern matc.. (context) - Myers - 1992
14
Nucleic Acids Res (context) - Hofmann, Bucher et al. - 1999
10
Approximate matching of network expressions with spacers
- Myers - 1996
9
Fast and exible string matching by combining bit-parallelism.. (context) - Navarro, Ranot - 1998
7
Fast regular expression search
- Navarro, Ranot - 1999
6
a fast approximate pattern-matching tool (context) - Wu, Manber - 1992
5
Text retrieval: Theory and practice
- Baeza-Yates - 1992
5
Regular expressions into nite automata (context) - Br - 1993
5
ProSearch: fast searching of protein sequences with regular .. (context) - Jr, Leunissen et al. - 1992
4
A bit-parallel approach to sux automata: Fast extended strin.. (context) - Navarro, Ranot - 1998
3
Screening protein and nucleic acid sequences against librari.. (context) - Staden - 1991
3
Translating regular expression into small (context) - Hromkovi, Sebastian et al. - 1997
3
A generalized prole syntax for biomolecular sequences motifs.. (context) - Bucher, Bairoch - 1994
Documents on the same site (http://www.dcc.uchile.cl/~gnavarro/publ.html): More
A More Precise Solution to Two Problems on Tries - Navarro, Poblete
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Fast Approximate String Matching in a Dictionary - Baeza-Yates, Navarro (1998)
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An Optimal Index for PAT Arrays - Navarro (1996)
(Correct)
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