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Fast and Simple Character Classes and Bounded Gaps Pattern Matching, with Application to Protein Searching (2001)  (Make Corrections)  (7 citations)
Gonzalo Navarro, Mathieu Raffinot
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Abstract: ] Gonzalo Navarro  Dept. of Computer Science University of Chile Blanco Encalada 2120 Santiago, Chile gnavarro@dcc.uchile.cl Mathieu Raffinot Equipe g enome, cellule et informatique Universit e de Versailles 45 avenue des Etats-Unis 78035 Versailles Cedex raffinot@genome.uvsq.fr ABSTRACT The problem of fast searching of a pattern that contains Classes of characters and Bounded size Gaps (CBG) in a text has a wide range of applications, among which a very important one is protein ... (Update)

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BibTeX entry:   (Update)

G. Navarro and M. Ranot. Fast and simple character classes and bounded gaps pattern matching, with application to protein searching. In Proceedings of the 5th Annual International Conference on Computational Molecular Biology (RECOMB), pages 231-240. ACM Press, 2001. http://citeseer.ist.psu.edu/article/navarro01fast.html   More

@inproceedings{ navarro01fast,
    author = "Gonzalo Navarro and Mathieu Raffinot",
    title = "Fast and simple character classes and bounded gaps pattern matching, with application to protein searching",
    booktitle = "{RECOMB}",
    pages = "231-240",
    year = "2001",
    url = "citeseer.ist.psu.edu/article/navarro01fast.html" }
Citations (may not include all citations):
204   Oxford University Press (context) - Crochemore, Rytter - 1994
196   Fast text searching allowing errors (context) - Wu, Manber - 1992
81   A new approach to text searching (context) - Baeza-Yates, Gonnet - 1992
64   From regular expression to deterministic automata (context) - Berry, Sethi - 1986
59   Speeding up two string-matching algorithms (context) - Czumaj, Crochemore et al. - 1994
57   Regular expression search algorithm (context) - Thompson - 1968
55   A fast bit-vector algorithm for approximate string matching .. - Myers - 1999
33   A sub-quadratic algorithm for approximate limited expression.. - Wu, Manber et al. - 1996
27   Taxonomies and toolkits of regular language algorithms (context) - Watson - 1995
24   Faster approximate string matching - Baeza-Yates, Navarro - 1999
22   A four-russian algorithm for regular expression pattern matc.. (context) - Myers - 1992
14   Nucleic Acids Res (context) - Hofmann, Bucher et al. - 1999
10   Approximate matching of network expressions with spacers - Myers - 1996
9   Fast and exible string matching by combining bit-parallelism.. (context) - Navarro, Ranot - 1998
7   Fast regular expression search - Navarro, Ranot - 1999
6   a fast approximate pattern-matching tool (context) - Wu, Manber - 1992
5   Text retrieval: Theory and practice - Baeza-Yates - 1992
5   Regular expressions into nite automata (context) - Br - 1993
5   ProSearch: fast searching of protein sequences with regular .. (context) - Jr, Leunissen et al. - 1992
4   A bit-parallel approach to sux automata: Fast extended strin.. (context) - Navarro, Ranot - 1998
3   Screening protein and nucleic acid sequences against librari.. (context) - Staden - 1991
3   Translating regular expression into small (context) - Hromkovi, Sebastian et al. - 1997
3   A generalized prole syntax for biomolecular sequences motifs.. (context) - Bucher, Bairoch - 1994

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